Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0953 |
Symbol | |
ID | 6115187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1262782 |
End bp | 1264062 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641632436 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001759341 |
Protein GI | 170725315 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTAAAAG CGACCCGTTT TTCAGGTAGA CATTATTTGA CGAGATGGAC CTCTGTAGCC CATAGGTTAT TTAATCCGTC CTCTCTCCTA TTTTTCTCTC TATTTTTAAG CACTTTTATT GCCACTGGAG TGTGGGCTCA GGCCTCTGAG GTTGAGTCGA GCCAAGAGGA GATCTTGCTT GGGATGTCCA CCGCACTGAG CGGGCCCGCT GAGCAGCTAG GTAAAAATAT GTTGTTAGGC GTGAATATGC AGTTTGCAAA GGAGAATAGC CAAGGTGGGA TTAACGGACG TCAGCTACGT TTAATTGCAA TGGACGATGG TTATGAGCCT AACCGAACCG CGCCAAATAT GAGGACCTTG ATTGAGCAAG ATAAAGTGCT TGCTGTGATC GGTAATGTTG GGACACCCAC TGCAATTTCA GCTATCCCCA TCGCCAATGA AAAGCAGACT TTACTGTTTG CTCCATTTAC AGGCGCTGGT GTATTACGTA AGACACCACC TGATCGCTAC ATTATAAATT ATCGAGCAAG CTATGCAGAA GAGACATCGA CTATGGTTGA TGCTTTGATT AAACATGCGG GCCTTAAACC TGAAGAGATA GCTTTTTTTA CCCAAAGAGA TGGCTATGGT GATGCTGGAT ATATCGGCGG TATCACTGCT TTACTAAAAA ATGGTTTGAA GTCTAAGTCT CAGGTTGTTC ATGGCCGATA TGAGCGAAAC ACCCTCTCGG TAGATAATGC ACTTGCCGAT ATCATCTTGG CAGAGGTTAC CCCAAAAGCG ATTATTATGG TTGGTGCATA TGCCCCTTGT GCCCGTTTTA TTAAACTTGC CAGAGAGTCT GGGGTGAATG CGTTATTTCT GAATGTGTCC TTTGTGGGAA GTGCACCTTT GGCGAAGCAA TTAGGGGAGA GTGTAAAAGG GGTGGTTGTG ACTCAGGTTG TGCCGCATCC TGAAAACCTT TCATTGCCCG TTGTTAAAGA GTACCAGGAT GCATTAACAG CCTTTGCCCC AGATGCGCTA CCTTCATTTG GTAGCTTAGA GGGGTATATT GCAGCCAAGA TCATGACAAA AGCATTAAAA ACGATAAGCG GTAAACCAAC GAGAGAGTCG CTTATTGATG CACTGGAGGC CCTAGGTAAG TTTGATGCTG GTGTGGGGAA TTCGCTCTAC TTTGACGCGA ATAGTCACCA AGCAAGCCAT ATGGTTTGGC CCACCCGTTT AGAGAAAGGC AAGTTTGTCT CTTTTGAATG GTCTGATATC GCCTCTTTTA TTGAGCAGTA A
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Protein sequence | MLKATRFSGR HYLTRWTSVA HRLFNPSSLL FFSLFLSTFI ATGVWAQASE VESSQEEILL GMSTALSGPA EQLGKNMLLG VNMQFAKENS QGGINGRQLR LIAMDDGYEP NRTAPNMRTL IEQDKVLAVI GNVGTPTAIS AIPIANEKQT LLFAPFTGAG VLRKTPPDRY IINYRASYAE ETSTMVDALI KHAGLKPEEI AFFTQRDGYG DAGYIGGITA LLKNGLKSKS QVVHGRYERN TLSVDNALAD IILAEVTPKA IIMVGAYAPC ARFIKLARES GVNALFLNVS FVGSAPLAKQ LGESVKGVVV TQVVPHPENL SLPVVKEYQD ALTAFAPDAL PSFGSLEGYI AAKIMTKALK TISGKPTRES LIDALEALGK FDAGVGNSLY FDANSHQASH MVWPTRLEKG KFVSFEWSDI ASFIEQ
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