| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0953 |
|---|
| Symbol | |
|---|
| ID | 6115187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1262782 |
|---|
| End bp | 1264062 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641632436 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001759341 |
|---|
| Protein GI | 170725315 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAAAG CGACCCGTTT TTCAGGTAGA CATTATTTGA CGAGATGGAC CTCTGTAGCC
CATAGGTTAT TTAATCCGTC CTCTCTCCTA TTTTTCTCTC TATTTTTAAG CACTTTTATT
GCCACTGGAG TGTGGGCTCA GGCCTCTGAG GTTGAGTCGA GCCAAGAGGA GATCTTGCTT
GGGATGTCCA CCGCACTGAG CGGGCCCGCT GAGCAGCTAG GTAAAAATAT GTTGTTAGGC
GTGAATATGC AGTTTGCAAA GGAGAATAGC CAAGGTGGGA TTAACGGACG TCAGCTACGT
TTAATTGCAA TGGACGATGG TTATGAGCCT AACCGAACCG CGCCAAATAT GAGGACCTTG
ATTGAGCAAG ATAAAGTGCT TGCTGTGATC GGTAATGTTG GGACACCCAC TGCAATTTCA
GCTATCCCCA TCGCCAATGA AAAGCAGACT TTACTGTTTG CTCCATTTAC AGGCGCTGGT
GTATTACGTA AGACACCACC TGATCGCTAC ATTATAAATT ATCGAGCAAG CTATGCAGAA
GAGACATCGA CTATGGTTGA TGCTTTGATT AAACATGCGG GCCTTAAACC TGAAGAGATA
GCTTTTTTTA CCCAAAGAGA TGGCTATGGT GATGCTGGAT ATATCGGCGG TATCACTGCT
TTACTAAAAA ATGGTTTGAA GTCTAAGTCT CAGGTTGTTC ATGGCCGATA TGAGCGAAAC
ACCCTCTCGG TAGATAATGC ACTTGCCGAT ATCATCTTGG CAGAGGTTAC CCCAAAAGCG
ATTATTATGG TTGGTGCATA TGCCCCTTGT GCCCGTTTTA TTAAACTTGC CAGAGAGTCT
GGGGTGAATG CGTTATTTCT GAATGTGTCC TTTGTGGGAA GTGCACCTTT GGCGAAGCAA
TTAGGGGAGA GTGTAAAAGG GGTGGTTGTG ACTCAGGTTG TGCCGCATCC TGAAAACCTT
TCATTGCCCG TTGTTAAAGA GTACCAGGAT GCATTAACAG CCTTTGCCCC AGATGCGCTA
CCTTCATTTG GTAGCTTAGA GGGGTATATT GCAGCCAAGA TCATGACAAA AGCATTAAAA
ACGATAAGCG GTAAACCAAC GAGAGAGTCG CTTATTGATG CACTGGAGGC CCTAGGTAAG
TTTGATGCTG GTGTGGGGAA TTCGCTCTAC TTTGACGCGA ATAGTCACCA AGCAAGCCAT
ATGGTTTGGC CCACCCGTTT AGAGAAAGGC AAGTTTGTCT CTTTTGAATG GTCTGATATC
GCCTCTTTTA TTGAGCAGTA A
|
|---|
| Protein sequence | MLKATRFSGR HYLTRWTSVA HRLFNPSSLL FFSLFLSTFI ATGVWAQASE VESSQEEILL
GMSTALSGPA EQLGKNMLLG VNMQFAKENS QGGINGRQLR LIAMDDGYEP NRTAPNMRTL
IEQDKVLAVI GNVGTPTAIS AIPIANEKQT LLFAPFTGAG VLRKTPPDRY IINYRASYAE
ETSTMVDALI KHAGLKPEEI AFFTQRDGYG DAGYIGGITA LLKNGLKSKS QVVHGRYERN
TLSVDNALAD IILAEVTPKA IIMVGAYAPC ARFIKLARES GVNALFLNVS FVGSAPLAKQ
LGESVKGVVV TQVVPHPENL SLPVVKEYQD ALTAFAPDAL PSFGSLEGYI AAKIMTKALK
TISGKPTRES LIDALEALGK FDAGVGNSLY FDANSHQASH MVWPTRLEKG KFVSFEWSDI
ASFIEQ
|
|---|
| |