| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0946 |
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| Symbol | |
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| ID | 6115180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1254794 |
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| End bp | 1256914 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641632429 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001759334 |
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| Protein GI | 170725308 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAGA GTTTTAAATT AAGATATCCC GCATTATTCA TCGCACTGAG TGTGTCATTA
TCAGGTCACG CTTTAGCAGA GCAGGGCGAT GAAGCTGAAA TGGAGGTGAT AACCATCAGT
GGTAAAGGGC TTATCTCCTA CGTGAGCGCA TCGGCATCAA AAACAGATAT GCCAATTATA
GAAACACCCT CATCTATCTC TGTTCTAACT GAGAAGCGTA TTACCGATCT GGGTGCTGAG
AATGTGCAAG ATGCCATCGG CTATGTGGCG GGAGTATACA ACGGTCCCTA TGGCGTCGAT
ACCCGTGGTG ACTGGGCACA AATTCGTGGC GTGTCTCCAC TACAGTATCA AGATGGCCTT
CAGATGATGT TCGGTAATTA CAATAATGTC CGGACTAACC CCTACATGTT GCAGCAGATT
GAGATCTTAA AAGGGCCATC CTCAGTGCTT TATGGCCAAG GTTCAACTGG CGGTATCATC
AATATGGTAA CTAAACGACC AGAGGCCGAA CAGCAAGGCG AGATCTGGGC TCAAGTCGGT
AATTATGATC GTAAGCAGCT CGCAGGCGAT GTAACGGGCT CACTCAATGA TGATGAATCG
GTTCAGTATC GATTAACCGG CTTGTACCGC GATAGTGAGA CGCAAACGGA TTATGTCGAT
AACAATAGTT ACTTTATTGC GCCGGCAATA ACTTGGTATG CGACAGATAC CACCAAGCTG
ACACTGCTGG CTAATTTGCA AAAAAATGAG TCTGGCTCCA GCACACAGTT CTTCCCTCAC
GAAGGAACGA TATTGCCAGC ACCAAATGGC CAAATATCTA GCTCACGCTT TGTCAGTGAG
CCTGGTTGGG ATCAATATGA TACCGAGCAA AAATCGGTGA CTCTTTTGCT AGAGCAGGAA
CTGAATGACT ATCTGTCACT CCACTGGACT AGCCGTTATG TTGACAGCAA AGCGACCTAT
CGCACCATGT TCGCTTGGCC GCCAAAGTTT CAAGATGATG GTCGCTCAAT TTTGCGTAAT
GTTAGCATGA GTGATTCAAG TGCGCAGGCG CTAACATCTG ATTTACGCTT GCAAGCTGAG
TTTGATACTG GCTCTGTGGA GCATAATCTG ACATTTGGTA TCGATTACCA AGATGTCGAT
ACCGACACCG ACCGACTCTA TATTCCAGGG GCGGGTGGTT TACTCGATCT TTACGATCCG
AAATATGGTC TTAATTTAGC TTCACTGCCC ACTGGAGCAG ATATTCCAGA TACGCCGGGT
GAAAGCAATA ATCAGTTGGG TATTTATCTG CAGGACTCAA TTAAGTTTGG TAACTTTATT
GTCAGCGGTG CACTTCGCCA TGACAGGGTG GAATCGAGAA CTACAAAAGA TGGTAAGCAA
GATCAAAGTG CGACAACGGG TCGTTTAGGT TTGATGTATA GCTTTGATTC AGGTATCGCC
CCTTATGTGA GCTACGCCCA ATCTTTTCAG CCTATTTATG GTTCAAATCA GGTTGGAACG
CCATTTAAGC CCCAAGAAGG CGAGCAGTAT GAGCTAGGGA TAAAATACCA GCCCTCAGGC
TCTGAACATC TATTTACTGC GGCTATTTTT GATATCACAG ATAAAAATCG TAAACAGTCT
GCGGGTCCTG ATTTGACGCT TCAGCTGGGT GAAGTTCAGA TCCAGGGGTT GGAGCTTGAA
GCCCAACTTG AGTGGGATGA AATAGATGTC TACGCTAGCT ATGCCTATAC AGACTCAGAG
AAGCACACCA ATAAAGTGGG TGAAGTCGAT GCTAAATTAG CTGCGATGCC GGAGCATATG
CTCTCAACTT GGGTGACCTA TCGTCCACAA TCATTTTGGC ATGGGTTTAA GGCGGGTTTG
GGCTTTCGAT ATGTAGGTGA AACCTCAGAT GGCAGTGTTG ATGTCTTTAT GCCCGATGGT
ACTCAGCTGC ATAACGCGTT AAACACAGAG GCTTACCACC TGTTTGATAT GATGCTTGGT
TATGAGTTTA GCGATTTTGA CTTGAGTTTG AATATTGATA ACTTGGCTGA TGAAACCGTT
ATTACCAGCT GTTTAGCCCG TGGTGATTGT TTCTACGGAC AGCGTAGAAC AATCACGGCC
AATGTCAGAT ATAAGTTTTA A
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| Protein sequence | MDQSFKLRYP ALFIALSVSL SGHALAEQGD EAEMEVITIS GKGLISYVSA SASKTDMPII
ETPSSISVLT EKRITDLGAE NVQDAIGYVA GVYNGPYGVD TRGDWAQIRG VSPLQYQDGL
QMMFGNYNNV RTNPYMLQQI EILKGPSSVL YGQGSTGGII NMVTKRPEAE QQGEIWAQVG
NYDRKQLAGD VTGSLNDDES VQYRLTGLYR DSETQTDYVD NNSYFIAPAI TWYATDTTKL
TLLANLQKNE SGSSTQFFPH EGTILPAPNG QISSSRFVSE PGWDQYDTEQ KSVTLLLEQE
LNDYLSLHWT SRYVDSKATY RTMFAWPPKF QDDGRSILRN VSMSDSSAQA LTSDLRLQAE
FDTGSVEHNL TFGIDYQDVD TDTDRLYIPG AGGLLDLYDP KYGLNLASLP TGADIPDTPG
ESNNQLGIYL QDSIKFGNFI VSGALRHDRV ESRTTKDGKQ DQSATTGRLG LMYSFDSGIA
PYVSYAQSFQ PIYGSNQVGT PFKPQEGEQY ELGIKYQPSG SEHLFTAAIF DITDKNRKQS
AGPDLTLQLG EVQIQGLELE AQLEWDEIDV YASYAYTDSE KHTNKVGEVD AKLAAMPEHM
LSTWVTYRPQ SFWHGFKAGL GFRYVGETSD GSVDVFMPDG TQLHNALNTE AYHLFDMMLG
YEFSDFDLSL NIDNLADETV ITSCLARGDC FYGQRRTITA NVRYKF
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