Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0902 |
Symbol | |
ID | 6115136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1202135 |
End bp | 1203823 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641632386 |
Product | malate dehydrogenase |
Protein accession | YP_001759291 |
Protein GI | 170725265 |
COG category | [C] Energy production and conversion |
COG ID | [COG0281] Malic enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGATC ATAAACGCCC GCTCTACCTT CCATTCGCTG GTCCCGCGAT TCTCGAAGCT CCCCTCATTA ACAAGGGCAG TGCATTTACC GATGAAGAGC GTGTATTTTT CAATCTTGAA GGCCTGCTTC CCCATGTCAT TGAAACCATC GAAGAGCAAG CGTCCCGTGC CTATGATCAA TACACCAACT TCACCAACGA TCTCGACAGG CATATCTACC TAAGAAACAT CCAAGATACC AACGAGACCC TCTATTACCG TTTAGTTCAA AATCACATTA CAGAGATGAT GCCGATCATC TACACGCCAA CCGTAGGGAT GGCCTGTGAG CGTTTCTCAA AGAACTATCG ACGTAACCGT GGCTTGTTTA TCTCATATCC TCATAAAGAC CGTATCGAAG ATATCCTGAA TAACTCGACC CGTCAGAAGG TCAAAATTAT TGTGGTCACC GACGGTGAGC GGATCTTAGG TCTAGGCGAT CAAGGCATTG GCGGCATGGG GATCCCAATC GGTAAACTCT CACTTTACAC TAGCTGTGGC GGTATAAGTC CAGCTTACAC ACTCCCTATC ACTTTAGATG TGGGTACTGA TAACCCTCAC CTACTTGAAG ATCCTATGTA TATGGGCTGG CGTAACCAGC GTATAGGCGG AGAAGAGTAT AAAGAGTTTG TTGAAGCCTT TATGCAGGCG GTTAATCGTC GCTGGCCTGA TGCCCTTATT CAGTTTGAAG ATTTCGCTCA GAAAAATGCA ATGCCACTGC TTGAGCGCTA TAAAGATCAG TACTGCTGCT TTAACGATGA TATTCAGGGC ACCGCCGCTG TAACCGTAGG CTCACTGCTT GCCGCTTGTA AAGCCGCAAA AAGCCAACTT TGTGAACAGC GAATCGCCTT TCTTGGTGCA GGCTCTGCTG GCTGTGGGAT TGCAGAAGCA ATTGTAGCGC AGATGGTATC GGAAGGGATT GATGAAGCTC AGGCACGCAG CCAAGTATTT ATGGTTGACC GTTGGGGACT GTTGCAAGAC AACATGCCTA ACCTGCTCAA CTTCCAAGAG AAGTTAGCCC AAAAAACGCA AGCCGTTAAA GACTGGACAA TCGAGAACGG CAATATCAGC CTACTCGATG TAATGAACAA TGCTAAGCCA ACCGTACTTA TCGGTGTATC TGGCGCGCCA GGACTCTTTA GTGAAGAGAT CATCAAAGCG ATGCATCAAC ACTGCCCTCG CCCAATTGTC TTCCCGCTGT CTAATCCAAC AAGTCGCGTT GAAGCCACAC CAAAAGATGT ACTGCACTGG ACAAACGGCC AAGCTTTAGT TGCCACAGGT AGCCCGTTCG AGCCTGTCGC GCTTAATGGC GAGACCTTCG AAATCGCCCA GTGTAATAAC AGTTACATCT TCCCAGGTAT AGGCCTAGGT GTGCTGTCAG CTGGTGCAAA ACGTGTCAGT GATGAGATGC TAATGGCATC AAGCCGCGCC TTAGCCGAAT GCTCACCACT TGCTCTAAAT GGTGAAGGCC CGCTACTGCC GCCACTCGAA GAGATCCACC AAGTCAGTAA GCATATCGCT TTTGCCGTCG CTAAAGTTGC AGTCGAACAG GGACACGCTC TCCCCTGTAC CGATGAGTTA CTCGCACAAT CAATCGAGAA CAACTTCTGG ACAGCAGAGT ATCGACGTTA CAAGAGAACC TCTTTCTAA
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Protein sequence | MDDHKRPLYL PFAGPAILEA PLINKGSAFT DEERVFFNLE GLLPHVIETI EEQASRAYDQ YTNFTNDLDR HIYLRNIQDT NETLYYRLVQ NHITEMMPII YTPTVGMACE RFSKNYRRNR GLFISYPHKD RIEDILNNST RQKVKIIVVT DGERILGLGD QGIGGMGIPI GKLSLYTSCG GISPAYTLPI TLDVGTDNPH LLEDPMYMGW RNQRIGGEEY KEFVEAFMQA VNRRWPDALI QFEDFAQKNA MPLLERYKDQ YCCFNDDIQG TAAVTVGSLL AACKAAKSQL CEQRIAFLGA GSAGCGIAEA IVAQMVSEGI DEAQARSQVF MVDRWGLLQD NMPNLLNFQE KLAQKTQAVK DWTIENGNIS LLDVMNNAKP TVLIGVSGAP GLFSEEIIKA MHQHCPRPIV FPLSNPTSRV EATPKDVLHW TNGQALVATG SPFEPVALNG ETFEIAQCNN SYIFPGIGLG VLSAGAKRVS DEMLMASSRA LAECSPLALN GEGPLLPPLE EIHQVSKHIA FAVAKVAVEQ GHALPCTDEL LAQSIENNFW TAEYRRYKRT SF
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