| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0829 |
|---|
| Symbol | |
|---|
| ID | 6115063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1116068 |
|---|
| End bp | 1119790 |
|---|
| Gene Length | 3723 bp |
|---|
| Protein Length | 1240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641632314 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001759219 |
|---|
| Protein GI | 170725193 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGAC GCATGAAAAC AATGGAATTA GTTTCCGATT TTGATGCCAT AAAATTCAAA
GATCGTCTGA CAACCTCAAT GTTATTACAG ATGGCGATCC GCCTTACTTT TATCGTGATA
TTAGTCGCAG GAGCAACTTA CTGGCACATA ACAACAATAT ATGAGACTCA AGTTGTTGAA
ACACTTGAAA AGTATATTAA AGAGCGTAGC GATAAAGAAA GTTTAATATT CGAGCTCGCA
GCTGAAAACC ATCAAGTATT TAAAAATAAT TTTATCGACG CTTTTAACAG TAATATAAAT
GTATCTGACA ACGAATTTAC TCAGCGCTTT ATCACTCAAC AAGATGGCAC CACTAGATTA
CAAGCTGAAG CATTTTATGG ATTAAGTACT GCACAAGGTG ATCAGCTTAA AAATCTAACT
GGATATATTG GGAGCCAAGC TCCTATTGAG GATCAAACTT TCAGAAATAA AGTCAATATC
TCCTACCATC TATTGGCTCA ATATGGTCCC GCTTGGACCA ACCGCTTTGA AAGTCTCTAT
GTTGCCATGC CTGAAAATGT CGCACTACTC TACTGGCCAG AATTACCTTG GGGGTTGGAC
GCAGAACCCC AACTAGATAT CACTAAAGAG CAGTGGTACA CCATAGCCAC TCAGGAAAAC
AATCCCCAAC GCTCCCCAGT ATGGACAGGA CTATATTTTG ATAAAACCGC TAAGGATTGG
ATGGTTTCTT TGGAAACCCC TGTCGATCTG AACTCCCAGC ACCTAATTAC TATTGGACAT
GACATTTTAC TGGTCGATGT GATTGACCGG ATCATCCATG ACAAGCTAGA AGGCACCTAC
AACTTTCTGG TCAGTGTCGA TGGACAGATT ATCGTGCACC CCAATGATGA AAAGATCATG
AAAAGTGGCG CGAATGAACT GCCCACCAGC ACCCAAAACG ACCCTCACCT CAAATCAATG
ATAAATAAGA TAATCACCGC AAGTCAGCAG ACAGATGAAA ACGTACTCAT TAATTTTGAT
GAAACTGAGC AAGCCTGGAT GGCGATCGCT CGGATTAATG GACCAGATTG GCTTCTAGTT
ACCGTATATC CCAAAAAGTT AGTGATCACA GCCGCTCGTT CCACAGCGCA CTTTGTACTC
ATCATTGGCT TACTGTCTCT GATTGTTGAG ATGTTAATGC TCTACTTTGT CACGCTAAAT
AAAGTCGTCA ATCCACTAAA GATGTTCGGC CGAGCATCGG CAGAGATAGG ACAGGCAAAT
TACCAACTCG TTGCTCGCGG CGATCTGGAA CTACCTAGCC ATCGAAAAGA TGAAATGGGC
ATCTTGGCCA ATGTGTTTAA GTCTATGGCT GGTAGAATTT TTGAGTACAG TACCACTCTT
GAGCAAAAAG TATCTGAGCG TACTTCAGAG CTGGTGGAGT CTCACAAGAG AGCCGAAATC
GCCAGCAAGG CAAAGTCAAA CTTTCTAGCC CATATGAGCC ATGAAGTTCG AACACCGATG
AATGCCATCA TTGGCTTAAG TCAGTTAATG CTAAAAACCA GTTTGGACAA GCGCCAACGT
GACTTTATGG AGAAAGTTCT CTCCTCCTCA GATGTATTGC TAAATACGAT TAATGATGTT
CTAGATTACT CAAAAATAGA AGCCAATAAG CTCACACTCG ATGAGTTTCA ATTCGATTTA
AGGGATGTCT TGCGCCGAGT AACCAATATC AGCGCCTATA AAGCCCAGAG TAAAGGAGTT
GAACTCCTTC TCGATGTCGA CGAAAAGGTG CCATTTCATT GGATAGGCGA TCCGACACGT
CTAGGACAGA TCCTCATTAA CTTGGCCAGT AATGCAGTCA AGTTTACTGA AAAAGGTGAA
GTGGTTATTC GCGTTAAGCT GCTAGAACAA CAAGGTCAGT TGAGCACTCT TCGCTTTAGC
ATCATTGATA CAGGAATAGG GATCGATCAT CACAGGCTCA ACCAGCTATT CTCTCCATTT
ACTCAAATCG ACTCCAGTAT CACCCGAAAA TATGGTGGAA CAGGACTGGG TCTAGCAATT
TGTCGCCAAT TAACTGAGTT GATGAATGGC AGGATCTGGG TCGATAGCGA GATAAACAAG
GGGAGCCAAT TTCATTTTAC CTGCAAGATA AAGCCAAATA ATGGCAGTAA CAGTCAGCGC
TGGCCTTCAT ATAATAAATT AAAAGGGATG CAGGCCTTAG TGGTCGATGA CAATGCCATG
GCCAGAGAGG TGCTCGCCGA TATTCTCTCC TCCTTAGGGA TTGAGGTGAC AACGGTTGCA
GATGGTTACG CCGCACTTGA TGAGCTTGAA TCTGCAACCA GCAGTGATAG CCCCTATGAT
GTGGTTTTTC TGGATTGGAA TATCCCAGCA ATCAATGGAG TCGAAACCGC CAAGAAGATT
GAAAACAATA TTAATATCAA GCCGCCTGTC GCCATGCTAA TGGTCACCGC ATACGATGTG
GACAGGGTAG AGACCGATGC CCATCAAGCC AATATTAAAA AAATAATCTC AAAGCCTGTC
GATGCCTCAG GGATCCATGA CAGCCTAGCT GAGATCTTCT TCCAGGAGAA GATACCTCGC
CCCACAAGCA CCAACAGAGA GCTCAACCTA TTAGGCAGTT TAGATCTCAG TGTTCTGCGT
GACAGCCGCA TCTTAGTCGT TGATGACAGT GCGCTCAATC GTGAAGTGGC AAGGGAGTTC
CTTGTGGATG TAGGAATCAA GGTGTCCACC GCCTCCAACG GAGAGCAAGC AATTCGCATG
ATTAAACAAG CCAATTACGA CTTGGTTCTG ATGGATGTAC AGATGCCAGT GATGGATGGT
TTAACGGCAA CTCAAATTAT TAGGGAAGAT AATCAGTATA AACAATTACC TATCATTGCC
ATGACCGCAC ATGCGTCTCC TGATGATTAT AAGAGAAGTT TAGATTCAGG CATGAACGAC
CATTTAAATA AACCCATAGA TCACCAGCTT CTATACCGCA CAATTACCCG CTGGATAGAT
GCAAGCGCAA GCATCAATCA ATTCGATGCT GATGAACCAG ATAGCTACCT CTCCTTCAGC
GAGCAGGATA AAACCAGTGA GCCAACCTCC ACAGAGAAGG AAGATACTTT CCCAATAGAG
CTTCCAGGAT TCGATACATC GATAGGATTA AAACGTCATA ATCATAAAGC GGATCTTTAC
CTCAGAATGC TTAATTTATT CTACAAGGAA TACCGCAATA TCGAGCAGGA GATCCGAGAG
GAGAAGTCTC AAGGTAACTT TACCTACTTA CATAGACTCT TCCACACCAT TAAATCCTCT
GCAGCTAGCT TAGGCGAAGC CACACTATCT GAACTAGCAT CTACACTTGA GAAGCTAATG
CACAATTTAG CTGTGCCAGT CGACAAGGAG TTGGATGAAA AAATAGAGCA GGAGCTTGCC
CTCTTTTTCA CACAGTTCAA TCATTCATTA GCTTCGCTAA CGCAGCTACA AGTAGAGGAG
AGCTCGACCA TAACAAGTTC AGACGTGGAT GACAGTAAAC GAGTAAAACA ACTCATTCAT
CAACTAAATG AACTATTAGA AGACGATAAT GCAGCCGCAG AAAAACTCAT TCATATGCTA
AAAGCAACAA GTGCAACCAA GGACCACAAT GACGCACTTG AATCAATTTT ACTGGAGATT
CAAGACGTAG ATTACTTCAG TGCCAGTAAG AAATTGAAAA TATTGGCACA ACAGATAGGT
TAA
|
|---|
| Protein sequence | MQGRMKTMEL VSDFDAIKFK DRLTTSMLLQ MAIRLTFIVI LVAGATYWHI TTIYETQVVE
TLEKYIKERS DKESLIFELA AENHQVFKNN FIDAFNSNIN VSDNEFTQRF ITQQDGTTRL
QAEAFYGLST AQGDQLKNLT GYIGSQAPIE DQTFRNKVNI SYHLLAQYGP AWTNRFESLY
VAMPENVALL YWPELPWGLD AEPQLDITKE QWYTIATQEN NPQRSPVWTG LYFDKTAKDW
MVSLETPVDL NSQHLITIGH DILLVDVIDR IIHDKLEGTY NFLVSVDGQI IVHPNDEKIM
KSGANELPTS TQNDPHLKSM INKIITASQQ TDENVLINFD ETEQAWMAIA RINGPDWLLV
TVYPKKLVIT AARSTAHFVL IIGLLSLIVE MLMLYFVTLN KVVNPLKMFG RASAEIGQAN
YQLVARGDLE LPSHRKDEMG ILANVFKSMA GRIFEYSTTL EQKVSERTSE LVESHKRAEI
ASKAKSNFLA HMSHEVRTPM NAIIGLSQLM LKTSLDKRQR DFMEKVLSSS DVLLNTINDV
LDYSKIEANK LTLDEFQFDL RDVLRRVTNI SAYKAQSKGV ELLLDVDEKV PFHWIGDPTR
LGQILINLAS NAVKFTEKGE VVIRVKLLEQ QGQLSTLRFS IIDTGIGIDH HRLNQLFSPF
TQIDSSITRK YGGTGLGLAI CRQLTELMNG RIWVDSEINK GSQFHFTCKI KPNNGSNSQR
WPSYNKLKGM QALVVDDNAM AREVLADILS SLGIEVTTVA DGYAALDELE SATSSDSPYD
VVFLDWNIPA INGVETAKKI ENNINIKPPV AMLMVTAYDV DRVETDAHQA NIKKIISKPV
DASGIHDSLA EIFFQEKIPR PTSTNRELNL LGSLDLSVLR DSRILVVDDS ALNREVAREF
LVDVGIKVST ASNGEQAIRM IKQANYDLVL MDVQMPVMDG LTATQIIRED NQYKQLPIIA
MTAHASPDDY KRSLDSGMND HLNKPIDHQL LYRTITRWID ASASINQFDA DEPDSYLSFS
EQDKTSEPTS TEKEDTFPIE LPGFDTSIGL KRHNHKADLY LRMLNLFYKE YRNIEQEIRE
EKSQGNFTYL HRLFHTIKSS AASLGEATLS ELASTLEKLM HNLAVPVDKE LDEKIEQELA
LFFTQFNHSL ASLTQLQVEE SSTITSSDVD DSKRVKQLIH QLNELLEDDN AAAEKLIHML
KATSATKDHN DALESILLEI QDVDYFSASK KLKILAQQIG
|
|---|
| |