Gene Swoo_0714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0714 
Symbol 
ID6114948 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp978459 
End bp981638 
Gene Length3180 bp 
Protein Length1059 aa 
Translation table11 
GC content49% 
IMG OID641632199 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001759104 
Protein GI170725078 
COG category[E] Amino acid transport and metabolism
[C] Energy production and conversion 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000141926 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value4.28455e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTTCAAAG CGAGTGAAGT TCTGATGGGT CACTATGACT CAACAAGCCT CGATGAGCTT 
TTTAAAGCCA TCACCAATAA CTATATTGTC GATGAAGAGC AGTATCTTTC TGAACTCATC
AAACTTGTAC CATCAAGTGA TGAGGAGATT AAGCGCGTCA CTGATCGCGC CCACGATATG
GTTAAAAAGG TGCGTCAATA CGATAAAAAA GGCCTGATGG TCGGTATTGA TGCCTTCTTG
CAACAATATA GCTTAGAGAC GCAGGAGGGT ATTATCCTGA TGTGTCTTGC AGAAGCACTC
CTACGTATTC CAGACTCGGC CACCGCCGAT GCACTGATAG AAGACAAACT ATCTGGTGCG
AAATGGGACG CTCATATCAG CAAGAGTGAT TCACTTTTGG TTAACGCATC GACTTGGGGG
CTAATGCTCA CAGGAAAGAT CGTTAAACTC GATCACAATG TTGACGGTAA GCCAAGCAGC
TTGCTCAACA AACTTGTTAA TCGCATGGGC GAACCTGTTA TCCGCCAAGC AATGCTTGCG
GCGATGAAGA TAATGGGTAA GCAGTTTGTA CTCGGACGCA CAGTTAAAGA GGCACTTAAA
AACAGTGTCG ATAAGCGAAA GCTTGGCTAT ACCCACAGCT ATGACATGCT GGGTGAAGCA
GCACTGACGA AAAAAGACGC CGAGCAGTAT TTTAAAGATT ACTCTAGCGC TATCGCCTCA
TTAGGTGAGC AGAGCTATGA TGAGTCTGAA GCCCCTCGTC CAACGATCTC AATTAAGCTC
TCAGCGCTTC ACCCACGTTA TGAAGTCGCC AATGAGGATA GAACGTTAAC TGAGCTATAC
GACACGCTAG TTAAACTGAT CCAGCAGGCC CGTAGTGTCA ATGTTGGGAT CTCTATCGAC
GCTGAAGAGA TGGATAGACT TGAGCTATCT CTAAAGCTGT TCCAGAAGCT ATATAACTCA
CAAGCAGCAA AAGGCTGGGG TGTGCTTGGC ATTGTTGTTC AGGCATACTC AAAACGTGCG
CTGCCAGTGC TGTGTTGGTT AACTCGCCTA TCTAAAGATC AAGGCGATGA GATCCCAGTA
CGCCTAGTTA AAGGCGCCTA TTGGGACAGC GAGCTTAAGT GGGGACAGGA AAACGGCGAA
GGTGGTTACC CACTTTTCAC TCGTAAAGCC AGCACTGATC TCTCCTACTT AGCCTGCGCC
CGATATCTAC TGAGCGATGC AACACGTGGT GCCATCTATC CACAGTTTGC CAGCCACAAC
GCGCAAACCG TGGCATCAAT CACGCATATG GCAGGTGATA GAAACTATGA GTTCCAACGT
CTACATGGAA TGGGTGAAGA GCTCTACGAT ACCCTGCTTG CTGAGGGTGG TGTAAAGGCA
GTACGCATCT ATGCTCCGGT GGGTGCCCAT AAAGATCTGC TTCCCTATTT GGTTCGTCGC
CTGCTTGAAA ACGGAGCAAA CACCTCCTTC GTTCATAAGT TAGTAGACCC TAAAACCCCT
ATTGAATCAC TAGTGATCCA CCCACTGGTC ACGCTACAAA AATACAAAAC CCTGGCTAAC
AATAAAATCG TATTGCCTGC CGATATCTTC GGTGAAGAGC GTCAAAATTC CAAGGGACTC
AACATGAACA TCATCTCAGA ATCTGAGCCA TTCTTCGCTG CACTAGATAA GTTTAAAGAC
ACCAACTGGA GCGCAGGCCC ACTGGTTAAT GGTGAGCTAT TAACTGGTGA AACACATGAA
GTCGTTAGCC CGTTCGACAC CAGCAAAGTC GTAGGTAAGT TAGCCTTTGC TAACAACCAA
GCGATCGAGC AAGCACTCTC TGGCGCCGAT GGCGCTTTTA GCAGCTGGTG TAACACCCCT
GTAGAAACCC GAGCTAATGC ACTGCAAAAA CTTGCCGACC TGCTTGAAGA GAACCGTGAG
GAGCTTATCG CCCTTTGTAC TCGAGAGGCG GGTAAGAGCA TTCAAGACGG CATTGATGAA
GTTCGTGAAG CGGTTGATTT TTGTCGCTAC TACGCCGTAC AAGCGAAGAA GATGATGGCG
CAACCTGAGC TGCTTCCAGG TCCAACAGGC GAGCTCAATG AGCTATTCCT CCAAGGCCGA
GGTATCTTTG TTTGTATCAG CCCATGGAAC TTCCCATTGG CTATCTTTAT CGGTCAAGTC
GCTGCCGCCC TTGCAGCGGG TAACACTGTT GTTGCTAAGC CTGCTGAGCA GACCTCTATT
GTCGGTTTCC GAGCGGTGCA GCTTGCTCAT CAAGCTGGTA TCCCTAAAGA GGTGTTACAG
TTCCTTCCAG GCACTGGTGC GACTGTTGGG GCAGCCATCA CCTCTGATGA GCGTATCGGC
GGTGTCTGTT TCACTGGCTC CACTGGTACG GCTAAGCTAA TTAACCGCAC TTTGGCAAAT
CGTGAAGGGG CTATTATTCC ACTTATCGCA GAGACAGGTG GTCAAAATGC GATGGTGGTT
GACTCAACAT CACAACCAGA GCAAGTGGTT AACGATGTGG TCTCCTCATC ATTCACCAGT
GCAGGACAGC GCTGCTCAGC ACTTCGTGTC CTCTTCCTAC AGGAAGATAT TGCCGACCGT
GTGCTTGATG TAATGCAAGG CGCAATGGAG GAGCTGACAA TAGGTGACCC AAGCTTTGTT
AAAACAGACG TAGGGCCAGT TATCGATGCA ACTGCTCAGG CTAACCTCAA TGCCCATATC
GACCATATCA AGCAGGTGGG TACTTTGCTG AAACAGCTAG AGCTACCAGC AGGTACAGAG
AAGGGGCACT TCGTTGCGCC GACTGCGGTA GAGATAGACT CTATCAAGGT GCTTGAGAAG
GAGCACTTCG GTCCAATCCT ACATGTCATT CGCTACAAGG CAGCCGATCT TAATAAGGTG
ATCGATGAGA TCAACTCAAC AGGATTTGGT CTGACATTAG GGATCCACAG CCGTAACGAA
GGCCACGCCC TTAAAGTTGC TGGTAAAGTT AATGTAGGTA ATGTCTACAT TAACCGTAAT
CAGATTGGCG CAGTGGTTGG CGTACAGCCA TTTGGCGGAC AGGGACTCTC AGGTACAGGC
CCTAAAGCGG GTGGTCCTCA CTACCTGACT CGTTTCGTGA CAGAGAAGAC TCGCACCAAT
AACATCACCG CGATTGGCGG TAATGCAACT CTACTCTCTC TAGGTGATAG CGACGAGTAA
 
Protein sequence
MFKASEVLMG HYDSTSLDEL FKAITNNYIV DEEQYLSELI KLVPSSDEEI KRVTDRAHDM 
VKKVRQYDKK GLMVGIDAFL QQYSLETQEG IILMCLAEAL LRIPDSATAD ALIEDKLSGA
KWDAHISKSD SLLVNASTWG LMLTGKIVKL DHNVDGKPSS LLNKLVNRMG EPVIRQAMLA
AMKIMGKQFV LGRTVKEALK NSVDKRKLGY THSYDMLGEA ALTKKDAEQY FKDYSSAIAS
LGEQSYDESE APRPTISIKL SALHPRYEVA NEDRTLTELY DTLVKLIQQA RSVNVGISID
AEEMDRLELS LKLFQKLYNS QAAKGWGVLG IVVQAYSKRA LPVLCWLTRL SKDQGDEIPV
RLVKGAYWDS ELKWGQENGE GGYPLFTRKA STDLSYLACA RYLLSDATRG AIYPQFASHN
AQTVASITHM AGDRNYEFQR LHGMGEELYD TLLAEGGVKA VRIYAPVGAH KDLLPYLVRR
LLENGANTSF VHKLVDPKTP IESLVIHPLV TLQKYKTLAN NKIVLPADIF GEERQNSKGL
NMNIISESEP FFAALDKFKD TNWSAGPLVN GELLTGETHE VVSPFDTSKV VGKLAFANNQ
AIEQALSGAD GAFSSWCNTP VETRANALQK LADLLEENRE ELIALCTREA GKSIQDGIDE
VREAVDFCRY YAVQAKKMMA QPELLPGPTG ELNELFLQGR GIFVCISPWN FPLAIFIGQV
AAALAAGNTV VAKPAEQTSI VGFRAVQLAH QAGIPKEVLQ FLPGTGATVG AAITSDERIG
GVCFTGSTGT AKLINRTLAN REGAIIPLIA ETGGQNAMVV DSTSQPEQVV NDVVSSSFTS
AGQRCSALRV LFLQEDIADR VLDVMQGAME ELTIGDPSFV KTDVGPVIDA TAQANLNAHI
DHIKQVGTLL KQLELPAGTE KGHFVAPTAV EIDSIKVLEK EHFGPILHVI RYKAADLNKV
IDEINSTGFG LTLGIHSRNE GHALKVAGKV NVGNVYINRN QIGAVVGVQP FGGQGLSGTG
PKAGGPHYLT RFVTEKTRTN NITAIGGNAT LLSLGDSDE