Gene Swoo_0648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0648 
Symbol 
ID6114882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp896404 
End bp899421 
Gene Length3018 bp 
Protein Length1005 aa 
Translation table11 
GC content48% 
IMG OID641632134 
Productcollagenase 
Protein accessionYP_001759039 
Protein GI170725013 
COG category 
COG ID 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000132044 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.83591e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAATTAA AACATCTGGT CGTCGCAATA GGACTCACTA CAAGTTTTGA CGCAGTAAGT 
AACCCCAGCA GTACCTATTC TCATCACATC GGTTTGTCAG AAAATCAGGC TCAAGCATCG
AAAACTGCCC TCACTCAAAC TCTCTCCCCT TGGGCGAGTA CAGAGACTAT GGCTGCAAGA
CCTGGACTGA TTGGGCCCAA TGGCCCAGCG GCAGCCGCCG ATTGCAGTAG CTTTATTGGG
TTAAGTGGCA GTGCGCTGGT GACTGAGCTG GCAAAATCAG ATCCACAATG TGTCAGCCCT
CTTTACAGCC TTAAGGGAGC CGATGCCACA GCTCTATTCA GTGAAGCAAA CATGCTCAGT
GTGGCAAATG GGATCACTAG TCGCGCTCCC GAATACACAG GGCTTGATAG CACAGGCATA
GAATCACTTA TCTACTTTCA ACGTGCTGCC CTTTATGTGC AGTTTTACAG CCCAGAAGAT
GTTCCCGCCT ACAGCAGTGC GGTAAAAGCA GATATCAAGA AGGAGATCAC GGCTATCTTT
GGAAACGCCA AGATCTGGAC TGTCTCAGAG GAGAACGCCA GCGTATTAAA GGAGTCTTTA
ATTTTAATCG ATTCGGCTGG GTTAGGTGCT GACTTTAACC ATATCACCAA AAGAGTGCTG
AGTGAGTACA ATGCCGACTG GCAAGCCAGC TGGGGCATGA ATGGCGCCGC GAACGCTATC
TTCACCACAC TATTTCGGGC ACAATGGGAT GATGCTATGA AGGCGCTGTT TGCGACCGAC
CATAGCATTC TCGACTCCCT CAATAACTTT CAGCTCAATA ATCGACACTT AGTGGGCAGC
AACGCTGAAT ATGTACTGCT TAACGGTATT CGTGAGATGT CCCGCCTTTA CCATATTCCC
CAGATGAAGA GCAGAGTCAC CACCTTAGTC AAAGCCGTAC TCGATAGCAG CAGTAAAAAC
GATGAGTCTA AGGTTATCTG GTTAGCCGCT GCTGAGATGG CAGATTATTA CGACAGGGCC
AACTGCAACT ATTATGATAT TTGTGGCTTT AAAGCTCAGC TCGAAGCCGA CACCTTAGGT
TTTAATTGGC AATGCTCAGA CACTTTAATG ATGCGCGCCC AAGCCCTCTA TCAAGATCAG
GCCAAATGGG CCTGTGAGGT GCTTGGGGGA CAAGAGATCT ACTTCCATAG CAAGTTAGGC
ACCAATAACA CACCTGTGGC AAATGATAAT AATGAAGCCC TTGAATTGGT CGTTTTTGAT
AGCTCCAGCG ATTATCAATC CTATGCAGGC ACCTTTTTCG GCATCAATAC CAACAATGGC
GGCATGTACC TTGAGGGTTC GCCTGCAGGA ATGAAAAACC AAGCCAGATT TATCGCCTAT
GAGGCGCAGT GGCGTCAACC TGACTTCCAT ATCTGGAACC TACAACATGA ATATGTTCAC
TACTTAGATG GGCGCTATAA CCTGCACGGT GATTTTGGTC GTGGGATCTC AGCTAATACC
ATCTGGTGGA TAGAGGGCTT AGCTGAATAT ATCTCCTACC GCGACGCCAA TACAGCGGCT
ATCGCAATGG GCGAAACTGC AGAGTACCCA CTCTCAACGA TTTTCAAAAA CAACTATGAC
TCAGGCCAAG ACCGTATCTA TCGCTGGGGA TATCTGGCGG TGCGCTTTAT GTTTGAAAAT
CACAAAGCAG ATGTGGACCA GATCTTAGCT TACCTGCGTA ATGATCAGTA TGAAGAGTAT
CAAGTCTTTA TGGACAGTAT CGGTACCCGC TATGACAACG AATGGACAGG TTGGCTTACC
AGTGGTTTAA GTGCCATAGA CAACGGTATT ATCGACCATG GCCCCTCTGA TACCGATGCA
CTACCAAGTG GCACTGACGG TAACTGGGCA GGTCCTAAAT CTACCATAAG TACAGATTAT
TCGCCCTGTA CTGTCAGCGA TGAAGCTTAT CGCTACAGTG ATGAAGCCAG CCTTAAACTA
GATACCCCCA TGGAGTGTAT CGACTCTCAA AATGGCAGAG CTAGCTTTGC CATTGCTAAT
GTCGACAGCA ATGCGCAAGA GATCTGGATT AAAGTTGGTG GTGGCTGGGG CGATGCTGAT
ATCTACTACA ACACAACAGG ATGGGCCAGC GGCGAGTCTA ATGAAGGTTA CGGTATAGGC
AATGGTAATC ATGAAGTGAT TAAGGTCACC ATGAACCCTG ACGAATATTG GCACTATATC
ACCCTAGCAG GTGATTTCGG AGGTGTGGAT ATGTTAGTTA GTACCACTGA GGTAGTTGCA
GACCCCGATC CCGCCCAAGG TGGTGATAAT GGCGGAGGAA CGCCCACTCC GGTTGAAGAT
TGTGGCGCAG CAACCATTAG CTATGGTCAA CTGACCTTAG GCCAAAATGA GTGCATCAGT
GGTGGCAAAA ATAGCTTATA TGTTTACGTT GAAGAGGATA ATACTCAACT CACCATCAGC
ACAGCAGGTG GCAGCGGTGA TGCTAATCTT TACTTCAATG AGGAGACTTG GGCAAGCAGT
ACCAACCATC AGGCTAGCTC AACAAATGCG GGTAATGATG AGACTTTACA TGTCACAGCA
AATAGAGGTT GGCGCTATAT TACGGTGGAC TCTGAGAGTG AATTTTCAGG CGTGACGGTC
AAGGTAGAGT TAGATACTGG AACATCACCT ACTCCACCGA ACTCAGGCGA TGCTTGTTTA
ACTCAAAACC CCACTAACAG TGCGCGCCTC ACCTCTGGGG AAGCTATCTG CGCAGACGAT
GGTATCAACT ACTATTCGCT CTGGGTCGAT GAGGGCACAA GTGAGCTAAC GGTGACCTCT
GCTTATGGTA GTGGAGATAT CAGCCTCTAT GGCGGCAGTT CTTGGTCAAA TGCCAATAGT
TATGAGGCTG CATCAACAAC AGCTGACAGC ACAAATGAAG CCTTTACTGT TAATAACCCT
ACACCGGGCT GGTACTACAT TACTGTTGCA AGCGAGGTCA CCAGTTCAGG GGTAGCGGTC
CAAGCTGAAT TAAAATAG
 
Protein sequence
MKLKHLVVAI GLTTSFDAVS NPSSTYSHHI GLSENQAQAS KTALTQTLSP WASTETMAAR 
PGLIGPNGPA AAADCSSFIG LSGSALVTEL AKSDPQCVSP LYSLKGADAT ALFSEANMLS
VANGITSRAP EYTGLDSTGI ESLIYFQRAA LYVQFYSPED VPAYSSAVKA DIKKEITAIF
GNAKIWTVSE ENASVLKESL ILIDSAGLGA DFNHITKRVL SEYNADWQAS WGMNGAANAI
FTTLFRAQWD DAMKALFATD HSILDSLNNF QLNNRHLVGS NAEYVLLNGI REMSRLYHIP
QMKSRVTTLV KAVLDSSSKN DESKVIWLAA AEMADYYDRA NCNYYDICGF KAQLEADTLG
FNWQCSDTLM MRAQALYQDQ AKWACEVLGG QEIYFHSKLG TNNTPVANDN NEALELVVFD
SSSDYQSYAG TFFGINTNNG GMYLEGSPAG MKNQARFIAY EAQWRQPDFH IWNLQHEYVH
YLDGRYNLHG DFGRGISANT IWWIEGLAEY ISYRDANTAA IAMGETAEYP LSTIFKNNYD
SGQDRIYRWG YLAVRFMFEN HKADVDQILA YLRNDQYEEY QVFMDSIGTR YDNEWTGWLT
SGLSAIDNGI IDHGPSDTDA LPSGTDGNWA GPKSTISTDY SPCTVSDEAY RYSDEASLKL
DTPMECIDSQ NGRASFAIAN VDSNAQEIWI KVGGGWGDAD IYYNTTGWAS GESNEGYGIG
NGNHEVIKVT MNPDEYWHYI TLAGDFGGVD MLVSTTEVVA DPDPAQGGDN GGGTPTPVED
CGAATISYGQ LTLGQNECIS GGKNSLYVYV EEDNTQLTIS TAGGSGDANL YFNEETWASS
TNHQASSTNA GNDETLHVTA NRGWRYITVD SESEFSGVTV KVELDTGTSP TPPNSGDACL
TQNPTNSARL TSGEAICADD GINYYSLWVD EGTSELTVTS AYGSGDISLY GGSSWSNANS
YEAASTTADS TNEAFTVNNP TPGWYYITVA SEVTSSGVAV QAELK