Gene Swoo_0636 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0636 
Symbol 
ID6114870 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp880027 
End bp881844 
Gene Length1818 bp 
Protein Length605 aa 
Translation table11 
GC content48% 
IMG OID641632122 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001759027 
Protein GI170725001 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0593463 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCCG AAGAAAAAAC TTTCCGCGAA CTCGGTCTTT CCGAGCCTTT GTTGCGTGCT 
CTTGATGAGC TAGGCTACGA AAAGCCTACC CCAATTCAAG CTGCAAGTAT CGACCCTCTT
ATGGCCAACA AGGACATATT AGGTCAGGCA CAGACTGGTA CAGGTAAAAC TGGTGCCTTC
GCTCTGCCAC TACTTAACAG CATCGACCCA ACAACCAATG CACCTCAAAT TTTAGTGCTA
GCGCCAACAC GTGAACTTGC TGTTCAGGTT GCAGAAGCTT TTGCTAGCTA CTCTAAATTT
ATGAAGGGCA TGCATGTACT ACCTATTTAT GGTGGTCAAA GCATGCAGCA GCAGCTTAAC
TCTCTTAGAC GTGGTCCACA GATCATCGTT GGTACTCCTG GCCGTGTTAT GGACCATATG
CGTCGTGGCA CACTTAAGCT CGCTACGCTT AAAGCTATGG TACTTGATGA AGCTGATGAG
ATGCTAAAAA TGGGCTTCAT CGATGATATC GAATGGATCC TTGAGCATAC ACCTCAAGAG
CGTCAACTAG CGCTTTTCTC AGCGACAATG CCTGAGCAAA TTAAGCGTGT TGCTAACAAG
TACTTGGATA ATCCAGTACA CGTTAAAATT GCAGCGACGA CAACAACAGT TGAAACCATC
GAGCAACGTT TTGTTCAGGT CTCTCAGCAC AACAAACTTG AAGCGTTAGT ACGTGTTCTT
GAAGTTGAAA AGACTGAAGG CATCATCATC TTCGTTCGTA CTCGTAACAG CTGTGTTGAG
CTAGCAGAGA AGCTTGAAGC TCGCGGTTAT GCATCATCAC CACTACACGG TGATATGAAC
CAGCAGGCTC GTGAGCGCGC AGTTGATCAA CTTAAGCGTG GCAAGCTAGA TATCATTATC
GCAACTGATG TTGCGGCTCG TGGTCTTGAC GTTGAGCGTA TCGGACACGT AGTTAACTAC
GATATCCCTT ATGATACTGA AGCTTATGTT CACCGTATTG GTCGTACAGG TCGTGCTGGT
CGTACAGGTA TGGCAATCTT ATTTGTTACA CACAGAGAGA TGCGTATGCT ACGCACTATC
GAACGTGCAA CAAAGAGCCG TATCTCACCA ATGGACGTTC CTAGCCCAGA GACAGTGACC
GAGCGTCGTC TATCTCGCCT AGGTGAGCAA GTTGCCGAGA TCATCAGCAA AGATTCTTTA
GATTTCATGA AGGGTGCTGT AGCTCAACTT TGTCAACAAC TTGAAGTCGA CACTGACATT
CTTGCAGCAG CACTGCTACA GCAAGTACAG AAAGAGCGTC CTTTACAGTT GCCGTCGATT
AACGAGCGTC AGCGTGACAA CCGTGATGAC CGTAACTCTC GCGATCGTGG TTCACGTGAC
CGTAATGATC GTCCTCGTCG TGATTCGCGC CCTACTCCAA CGAACTTGGG TAAAGCCGAT
GCACTTAAGG ACAATCCAGA CGTTAAGATG AGCCGTTACA TCATAGATGT GGGTCGTGAT
CATGGTGTTG GTGTAGGTAA TATCGTTGGC GCTGTTGCAA ACGAAGCAAA CATCGACAGC
CGCTATATTG GTCAGATTCA GTTATTTGAT AACATGACTG CTATCGATCT TCCTGATGGT
ATGCCAAAGG ATGTACTGGA CCACCTTAAA AAGGTTCGTG TTTGTGGTAA GCCACTAAAC
ATTCGTGAAG CTGATGGTGC TGAGATGCCA GCTGGAGACA GCCGTCCACC ACGTCGCCCA
CGTAAGCCTT CTGGTGACCG TCGCCCATCA GGTGACAGAA AGCCACACCG CAAAGGCCCA
TCAAGAGATA GCGAGTAA
 
Protein sequence
MSSEEKTFRE LGLSEPLLRA LDELGYEKPT PIQAASIDPL MANKDILGQA QTGTGKTGAF 
ALPLLNSIDP TTNAPQILVL APTRELAVQV AEAFASYSKF MKGMHVLPIY GGQSMQQQLN
SLRRGPQIIV GTPGRVMDHM RRGTLKLATL KAMVLDEADE MLKMGFIDDI EWILEHTPQE
RQLALFSATM PEQIKRVANK YLDNPVHVKI AATTTTVETI EQRFVQVSQH NKLEALVRVL
EVEKTEGIII FVRTRNSCVE LAEKLEARGY ASSPLHGDMN QQARERAVDQ LKRGKLDIII
ATDVAARGLD VERIGHVVNY DIPYDTEAYV HRIGRTGRAG RTGMAILFVT HREMRMLRTI
ERATKSRISP MDVPSPETVT ERRLSRLGEQ VAEIISKDSL DFMKGAVAQL CQQLEVDTDI
LAAALLQQVQ KERPLQLPSI NERQRDNRDD RNSRDRGSRD RNDRPRRDSR PTPTNLGKAD
ALKDNPDVKM SRYIIDVGRD HGVGVGNIVG AVANEANIDS RYIGQIQLFD NMTAIDLPDG
MPKDVLDHLK KVRVCGKPLN IREADGAEMP AGDSRPPRRP RKPSGDRRPS GDRKPHRKGP
SRDSE