Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0556 |
Symbol | |
ID | 6114790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 779260 |
End bp | 782490 |
Gene Length | 3231 bp |
Protein Length | 1076 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641632042 |
Product | CzcA family heavy metal efflux protein |
Protein accession | YP_001758947 |
Protein GI | 170724921 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACAGA GACTGATTGA GGTTGCGATC CGTAACCGAT TACTGGTGGC ACTTGGCTTG ATCGCCATTG CGGTCGCAAG TGTGGCCATG TTGCCAAAAT TAAACCTGGA TGCCTTTCCA GATGTGACCA ATGTTCAGGT CACAGTGAAT ACCGAAGCTG AAGGTCTGGC TGCAGAGGAG GTTGAAAAAC TCATTAGTTA TCCGGTTGAG TCGGCTATGT ACGCCCTGCC TGCGGTGACA GAGGTTCGCT CACTGTCGCG AACTGGCTTG TCTTTAGTCA CCGTTGTGTT CGCCGAAGGC ACGGATATCT ATTTTGCTCG CCAACAGGTA TTTGAGCAGT TGCAGGCGGC GCGGGAGATG ATCCCCGATG GGATCGGTGT GCCAGAAATT GGCCCAAACA CCTCAGGGTT AGGACAGATC TATCAATATA TCCTGCGTGC TGCGCCAGAT GCAGGTATCG ATGCAGCGGA GCTGCGTAGT CTTAACGATT ACCTCGTTAA GCTAATCATG ATGCCAGTAG GCGGGGTGAC CGATGTACTC TCCTTTGGTG GTGATGTTCG TCAATACCAA GTGCAGATAG ATCCTACTAA GCTACTCAGT TTTGGCCTCT CTATGGAGCA GGTAACCACA GCTCTTGAGA GTAATAACCG CAATGCTGGT GGCTGGTTTA TGGACCAAGG ACAGGAGCAG CTAGTGGTTC GTGGCTATGG TCTTCTGCCT GCTGGAGAAG CTGGTTTGCA GGCGATAGCC CAGATCCCAT TATCTGAGTT TGCCGGTACG CCAATTCGTG TCAGTGATAT TGCAACAGTT GCCTACGGCA GTGAGATCCG TGTCGGTGCC GTTACCATGA CACGCCGTGA TGAAGCGGGT AATGCGCAGG ATTTAGGTGA AGTGGTTGCC GGGGTTATCT TAAAGCGTAT GGGCGCGAAT ACTAAGGCGA CCATCGATGA TATTAATGCC AGAACGGCAA TGGTGGAGCA GGCTCTGCCT GAGGGCGTGA CCTTTGAGGT GTTCTACGAT CAATCCGATC TGGTGACCCA AGCTGTGACT ACAGTGCGCG ATGCACTCTT GATGGCATTT GTGTTTATCG TGGTCATTTT GGCACTGTTT CTGGTGAATA TCCGTGCCAC CTTATTGGTA CTGCTCTCTA TTCCTGTCTC TATCTGTCTT GCCTTGATGG TGATGTCATA CTTCGGCATG TCGGCCAACT TGATGTCACT GGGTGGACTT GCGGTGGCTA TCGGTATGTT GGTGGATGGC TCAGTGGTGA TGGTGGAGAA TATCTTTAAA CATCTGACTC AGCCTGATAG ACAGCATTTG AGTGATGCTC AGCGTAGAGC GGATGGAGAG TTAGACCCTC ACCATGCCGA TGAAGATGGC TCAAAAGCAG GCTTTGAAGA TGGTATTGCC ATGCGAGTAA TGTTGGCGGC AAAAGAGGTG TGTAGCCCTA TCTTCTTTGC AACGGCGATC ATTATTGTGG TGTTTGCGCC CCTGTTTGCG TTAGAGGGGG TTGAGGGTAA ATTGTTCCAG CCGATGGCGG TGAGCATTAT TCTAGCCATG CTGTCAGCCC TTGTGGTGGC GCTGGTTGCG GTTCCGGCTC TTGCAGTCTT CCTGTTTAAA CGTGGGATCA CCTTAAGAGA GAGCCCAGTT CTTAAGCCGA TTGAAGCTGG CTATCGCCGC CTGTTAACGG CAACCATGGC AAAGCCTAAA ACGGTGATCG TCACCGCCGT GGTGATGTTT GGCCTGAGCA TGGCGCTCTT GCCACGTTTA GGAACCGAGT TTGTACCTGA GCTGGAGGAG GGCACGATTA ATCTACGTGT GACTCTAGCT CCTACCGCTA GTCTTAGGAC TTCACTGGAT GTTGCTCCTA AGCTTGAGAA GATGCTGCTG GAGTTTCCAG AGGTTGAATA TGCATTGAGT CGTATCGGCG CCGCCGAATT AGGGGGCGAT CCTGAGCCTG TGAACAATAT CGAGATCTAC ATCGGTCTGA AACCAGTCGA TGAGTGGCGC TCTGCTGAAA ATCGTATTGA ACTGCAAAAA CTGATGGAGA AGGAGCTAAG CGTCTTTCCA GGCCTGCTGT TTACCTTCTC TCAACCGATT GCGACTCGAG TGGATGAATT GCTGTCAGGG GTAAAAGCGC AGCTGGCGAT CAAGCTATTT GGTCCCGATC TTGATGTGTT ATCTGAAAGT GGCGAAAGAC TCACGGCTTT AGTCGCTGGG ATCCCTGGCG CTGTGGATGT CTCTTTGGAG CAGGTGAGTG GCGAAGCTCA GCTGGTGGTG CGCCCTAAAC GTGAGCTGCT TGCACGCTAT GGTATCAGTG TCGATGAGGT GATGAGCCTA GTCAGCCAAG GTATTGGTGG TACCAGCGCT GGACAAGTGA TCGATGGCAA TGCCAGATAC GATATTAATA TGCGTTTGGC CGAGGAGTAT CGTAATGCAC CAGATGCCCT TAGGGATCTG ATCTTAAGTG GTGTCAGTGG TGCCAAGGTG CGCTTGGGTG AAGTGGCCAG CGTTGAAGTT GAGATGGCGC CGCCGAATAT TCGCCGTGAC GATGTTCAGC GCCGCGTTGT GGTACAGGCT AACGTATCGG GCCGAGATAT GGGCTCTGTG GTTGACGATA TCTACGCCAT TATTCCACAG GCAGAACTGC CACCAGGCTA TACGGTTGTG GTGGGCGGTC AATATGAGAA TCAGCAGCGT GCTCAACAAA AGTTGATGTT AGTGGTGCCA GTCTCTATTG GCCTTATTGC GCTACTGCTC TTCTTCTCAT TTGGCTCGGT GAAGCAAGTG GGCTTAATTA TGGCGAACGT GCCTTTGGCA TTAATTGGTG GTGTGGTCGC CCTGTTTGTC AGTGGCACTT ATCTGTCGGT ACCGAGCTCA ATCGGCTTTA TCACCCTATT TGGCGTAGCT GTGCTTAATG GCGTGGTGTT AGTGGACTCG ATTAACCAGC GACGTCAGGC TGCGCTGAAA GATAAATTAG GCTCAAACGC TGGTGAAAGT CTCTATACCA GTGTGTATGA AGGCACGGTA GGGCGTTTGC GTCCGGTATT AATGACGGCC TTGACCTCAG CTTTAGGTCT GATCCCTATC TTGGTATCGA GCGGTGTGGG CAGTGAGATC CAGCAGCCTC TTGCTGTGGT GATTATTGGT GGTCTATTTA GTTCGACCGC TTTGACCTTG CTGGTATTAC CGACCCTGTA TCGCTGGATC TATAGAGGTG AAGAAAAGTA G
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Protein sequence | MLQRLIEVAI RNRLLVALGL IAIAVASVAM LPKLNLDAFP DVTNVQVTVN TEAEGLAAEE VEKLISYPVE SAMYALPAVT EVRSLSRTGL SLVTVVFAEG TDIYFARQQV FEQLQAAREM IPDGIGVPEI GPNTSGLGQI YQYILRAAPD AGIDAAELRS LNDYLVKLIM MPVGGVTDVL SFGGDVRQYQ VQIDPTKLLS FGLSMEQVTT ALESNNRNAG GWFMDQGQEQ LVVRGYGLLP AGEAGLQAIA QIPLSEFAGT PIRVSDIATV AYGSEIRVGA VTMTRRDEAG NAQDLGEVVA GVILKRMGAN TKATIDDINA RTAMVEQALP EGVTFEVFYD QSDLVTQAVT TVRDALLMAF VFIVVILALF LVNIRATLLV LLSIPVSICL ALMVMSYFGM SANLMSLGGL AVAIGMLVDG SVVMVENIFK HLTQPDRQHL SDAQRRADGE LDPHHADEDG SKAGFEDGIA MRVMLAAKEV CSPIFFATAI IIVVFAPLFA LEGVEGKLFQ PMAVSIILAM LSALVVALVA VPALAVFLFK RGITLRESPV LKPIEAGYRR LLTATMAKPK TVIVTAVVMF GLSMALLPRL GTEFVPELEE GTINLRVTLA PTASLRTSLD VAPKLEKMLL EFPEVEYALS RIGAAELGGD PEPVNNIEIY IGLKPVDEWR SAENRIELQK LMEKELSVFP GLLFTFSQPI ATRVDELLSG VKAQLAIKLF GPDLDVLSES GERLTALVAG IPGAVDVSLE QVSGEAQLVV RPKRELLARY GISVDEVMSL VSQGIGGTSA GQVIDGNARY DINMRLAEEY RNAPDALRDL ILSGVSGAKV RLGEVASVEV EMAPPNIRRD DVQRRVVVQA NVSGRDMGSV VDDIYAIIPQ AELPPGYTVV VGGQYENQQR AQQKLMLVVP VSIGLIALLL FFSFGSVKQV GLIMANVPLA LIGGVVALFV SGTYLSVPSS IGFITLFGVA VLNGVVLVDS INQRRQAALK DKLGSNAGES LYTSVYEGTV GRLRPVLMTA LTSALGLIPI LVSSGVGSEI QQPLAVVIIG GLFSSTALTL LVLPTLYRWI YRGEEK
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