Gene Swoo_0556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0556 
Symbol 
ID6114790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp779260 
End bp782490 
Gene Length3231 bp 
Protein Length1076 aa 
Translation table11 
GC content51% 
IMG OID641632042 
ProductCzcA family heavy metal efflux protein 
Protein accessionYP_001758947 
Protein GI170724921 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3696] Putative silver efflux pump 
TIGRFAM ID[TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTACAGA GACTGATTGA GGTTGCGATC CGTAACCGAT TACTGGTGGC ACTTGGCTTG 
ATCGCCATTG CGGTCGCAAG TGTGGCCATG TTGCCAAAAT TAAACCTGGA TGCCTTTCCA
GATGTGACCA ATGTTCAGGT CACAGTGAAT ACCGAAGCTG AAGGTCTGGC TGCAGAGGAG
GTTGAAAAAC TCATTAGTTA TCCGGTTGAG TCGGCTATGT ACGCCCTGCC TGCGGTGACA
GAGGTTCGCT CACTGTCGCG AACTGGCTTG TCTTTAGTCA CCGTTGTGTT CGCCGAAGGC
ACGGATATCT ATTTTGCTCG CCAACAGGTA TTTGAGCAGT TGCAGGCGGC GCGGGAGATG
ATCCCCGATG GGATCGGTGT GCCAGAAATT GGCCCAAACA CCTCAGGGTT AGGACAGATC
TATCAATATA TCCTGCGTGC TGCGCCAGAT GCAGGTATCG ATGCAGCGGA GCTGCGTAGT
CTTAACGATT ACCTCGTTAA GCTAATCATG ATGCCAGTAG GCGGGGTGAC CGATGTACTC
TCCTTTGGTG GTGATGTTCG TCAATACCAA GTGCAGATAG ATCCTACTAA GCTACTCAGT
TTTGGCCTCT CTATGGAGCA GGTAACCACA GCTCTTGAGA GTAATAACCG CAATGCTGGT
GGCTGGTTTA TGGACCAAGG ACAGGAGCAG CTAGTGGTTC GTGGCTATGG TCTTCTGCCT
GCTGGAGAAG CTGGTTTGCA GGCGATAGCC CAGATCCCAT TATCTGAGTT TGCCGGTACG
CCAATTCGTG TCAGTGATAT TGCAACAGTT GCCTACGGCA GTGAGATCCG TGTCGGTGCC
GTTACCATGA CACGCCGTGA TGAAGCGGGT AATGCGCAGG ATTTAGGTGA AGTGGTTGCC
GGGGTTATCT TAAAGCGTAT GGGCGCGAAT ACTAAGGCGA CCATCGATGA TATTAATGCC
AGAACGGCAA TGGTGGAGCA GGCTCTGCCT GAGGGCGTGA CCTTTGAGGT GTTCTACGAT
CAATCCGATC TGGTGACCCA AGCTGTGACT ACAGTGCGCG ATGCACTCTT GATGGCATTT
GTGTTTATCG TGGTCATTTT GGCACTGTTT CTGGTGAATA TCCGTGCCAC CTTATTGGTA
CTGCTCTCTA TTCCTGTCTC TATCTGTCTT GCCTTGATGG TGATGTCATA CTTCGGCATG
TCGGCCAACT TGATGTCACT GGGTGGACTT GCGGTGGCTA TCGGTATGTT GGTGGATGGC
TCAGTGGTGA TGGTGGAGAA TATCTTTAAA CATCTGACTC AGCCTGATAG ACAGCATTTG
AGTGATGCTC AGCGTAGAGC GGATGGAGAG TTAGACCCTC ACCATGCCGA TGAAGATGGC
TCAAAAGCAG GCTTTGAAGA TGGTATTGCC ATGCGAGTAA TGTTGGCGGC AAAAGAGGTG
TGTAGCCCTA TCTTCTTTGC AACGGCGATC ATTATTGTGG TGTTTGCGCC CCTGTTTGCG
TTAGAGGGGG TTGAGGGTAA ATTGTTCCAG CCGATGGCGG TGAGCATTAT TCTAGCCATG
CTGTCAGCCC TTGTGGTGGC GCTGGTTGCG GTTCCGGCTC TTGCAGTCTT CCTGTTTAAA
CGTGGGATCA CCTTAAGAGA GAGCCCAGTT CTTAAGCCGA TTGAAGCTGG CTATCGCCGC
CTGTTAACGG CAACCATGGC AAAGCCTAAA ACGGTGATCG TCACCGCCGT GGTGATGTTT
GGCCTGAGCA TGGCGCTCTT GCCACGTTTA GGAACCGAGT TTGTACCTGA GCTGGAGGAG
GGCACGATTA ATCTACGTGT GACTCTAGCT CCTACCGCTA GTCTTAGGAC TTCACTGGAT
GTTGCTCCTA AGCTTGAGAA GATGCTGCTG GAGTTTCCAG AGGTTGAATA TGCATTGAGT
CGTATCGGCG CCGCCGAATT AGGGGGCGAT CCTGAGCCTG TGAACAATAT CGAGATCTAC
ATCGGTCTGA AACCAGTCGA TGAGTGGCGC TCTGCTGAAA ATCGTATTGA ACTGCAAAAA
CTGATGGAGA AGGAGCTAAG CGTCTTTCCA GGCCTGCTGT TTACCTTCTC TCAACCGATT
GCGACTCGAG TGGATGAATT GCTGTCAGGG GTAAAAGCGC AGCTGGCGAT CAAGCTATTT
GGTCCCGATC TTGATGTGTT ATCTGAAAGT GGCGAAAGAC TCACGGCTTT AGTCGCTGGG
ATCCCTGGCG CTGTGGATGT CTCTTTGGAG CAGGTGAGTG GCGAAGCTCA GCTGGTGGTG
CGCCCTAAAC GTGAGCTGCT TGCACGCTAT GGTATCAGTG TCGATGAGGT GATGAGCCTA
GTCAGCCAAG GTATTGGTGG TACCAGCGCT GGACAAGTGA TCGATGGCAA TGCCAGATAC
GATATTAATA TGCGTTTGGC CGAGGAGTAT CGTAATGCAC CAGATGCCCT TAGGGATCTG
ATCTTAAGTG GTGTCAGTGG TGCCAAGGTG CGCTTGGGTG AAGTGGCCAG CGTTGAAGTT
GAGATGGCGC CGCCGAATAT TCGCCGTGAC GATGTTCAGC GCCGCGTTGT GGTACAGGCT
AACGTATCGG GCCGAGATAT GGGCTCTGTG GTTGACGATA TCTACGCCAT TATTCCACAG
GCAGAACTGC CACCAGGCTA TACGGTTGTG GTGGGCGGTC AATATGAGAA TCAGCAGCGT
GCTCAACAAA AGTTGATGTT AGTGGTGCCA GTCTCTATTG GCCTTATTGC GCTACTGCTC
TTCTTCTCAT TTGGCTCGGT GAAGCAAGTG GGCTTAATTA TGGCGAACGT GCCTTTGGCA
TTAATTGGTG GTGTGGTCGC CCTGTTTGTC AGTGGCACTT ATCTGTCGGT ACCGAGCTCA
ATCGGCTTTA TCACCCTATT TGGCGTAGCT GTGCTTAATG GCGTGGTGTT AGTGGACTCG
ATTAACCAGC GACGTCAGGC TGCGCTGAAA GATAAATTAG GCTCAAACGC TGGTGAAAGT
CTCTATACCA GTGTGTATGA AGGCACGGTA GGGCGTTTGC GTCCGGTATT AATGACGGCC
TTGACCTCAG CTTTAGGTCT GATCCCTATC TTGGTATCGA GCGGTGTGGG CAGTGAGATC
CAGCAGCCTC TTGCTGTGGT GATTATTGGT GGTCTATTTA GTTCGACCGC TTTGACCTTG
CTGGTATTAC CGACCCTGTA TCGCTGGATC TATAGAGGTG AAGAAAAGTA G
 
Protein sequence
MLQRLIEVAI RNRLLVALGL IAIAVASVAM LPKLNLDAFP DVTNVQVTVN TEAEGLAAEE 
VEKLISYPVE SAMYALPAVT EVRSLSRTGL SLVTVVFAEG TDIYFARQQV FEQLQAAREM
IPDGIGVPEI GPNTSGLGQI YQYILRAAPD AGIDAAELRS LNDYLVKLIM MPVGGVTDVL
SFGGDVRQYQ VQIDPTKLLS FGLSMEQVTT ALESNNRNAG GWFMDQGQEQ LVVRGYGLLP
AGEAGLQAIA QIPLSEFAGT PIRVSDIATV AYGSEIRVGA VTMTRRDEAG NAQDLGEVVA
GVILKRMGAN TKATIDDINA RTAMVEQALP EGVTFEVFYD QSDLVTQAVT TVRDALLMAF
VFIVVILALF LVNIRATLLV LLSIPVSICL ALMVMSYFGM SANLMSLGGL AVAIGMLVDG
SVVMVENIFK HLTQPDRQHL SDAQRRADGE LDPHHADEDG SKAGFEDGIA MRVMLAAKEV
CSPIFFATAI IIVVFAPLFA LEGVEGKLFQ PMAVSIILAM LSALVVALVA VPALAVFLFK
RGITLRESPV LKPIEAGYRR LLTATMAKPK TVIVTAVVMF GLSMALLPRL GTEFVPELEE
GTINLRVTLA PTASLRTSLD VAPKLEKMLL EFPEVEYALS RIGAAELGGD PEPVNNIEIY
IGLKPVDEWR SAENRIELQK LMEKELSVFP GLLFTFSQPI ATRVDELLSG VKAQLAIKLF
GPDLDVLSES GERLTALVAG IPGAVDVSLE QVSGEAQLVV RPKRELLARY GISVDEVMSL
VSQGIGGTSA GQVIDGNARY DINMRLAEEY RNAPDALRDL ILSGVSGAKV RLGEVASVEV
EMAPPNIRRD DVQRRVVVQA NVSGRDMGSV VDDIYAIIPQ AELPPGYTVV VGGQYENQQR
AQQKLMLVVP VSIGLIALLL FFSFGSVKQV GLIMANVPLA LIGGVVALFV SGTYLSVPSS
IGFITLFGVA VLNGVVLVDS INQRRQAALK DKLGSNAGES LYTSVYEGTV GRLRPVLMTA
LTSALGLIPI LVSSGVGSEI QQPLAVVIIG GLFSSTALTL LVLPTLYRWI YRGEEK