Gene Swoo_0501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0501 
Symbol 
ID6114735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp711514 
End bp713352 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content42% 
IMG OID641631988 
Productrestriction modification system DNA specificity subunit 
Protein accessionYP_001758893 
Protein GI170724867 
COG category[V] Defense mechanisms 
COG ID[COG0732] Restriction endonuclease S subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.435558 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAGC ACGCATTAAA TAAGGCTGTG GAACTAACGA CAGAGTTAAC CGCAGAGCAA 
TTAATCACTG AGAACCTTGA TATCTGGACG ACCGCCATCG AGCAAAAGTC AGCGTCAGGC
CGTGGTTCAT CAAAGAAATT TTCACTGCAT GGCATTAAAA AGTTGCGTGA ACTGATCTTG
GAACTCGCCG TTCGCGGTAA GTTAGTACCA CAGGCCAGCC GCGAGGCGAG AAATAGTGCT
AGCTATGAAC CAGCATCAAT ATTGCTTGAG CGCATTGCTA GCGAAAAAGC ACAATTGGTG
AAAGACAAGA AGATTAAAAA GCCTAAAGCT TTGCCTGTAA TTAGCGAGGA TGAAAAGCCG
TTTGAGCTGC CCAAGGGGTG GGAGTGGACG AGGCTTCAAG ATATTGGACA TGACCTTGGT
CAAAAGACAC CTGATTGCGA ATTTACATAT ATAGATGTTG GTGCAATCAA TAAAGAACTA
GGCTTTGTTG AAGAGCCAAG TATCTTAAAA GCTTCTGACG CACCATCTCG GGCACGAAAA
CTTGTAAAAA GAAATACCGT TATTTATTCG ACTGTACGAC CATATTTACT CAATATTGCG
GTCATTGGTA ACGATTTATC TCCAGAACCT ATTGCGAGTA CAGCCTTTGC AATCATCCAC
CCTTTATTGG GAATGAATAG CTCATATATT TATCGTTATT TGCGTTCACC TTGTTTCATT
AATTATGTCG AAAGCGTTCA GACAGGTATT GCTTACCCAG CAATTAATGA TAAACAATTT
TTCAATGGCA TTATTGCAAT TCCTCCAACT GAAGAGCAAC ACCGCATCGT CGCTAAAGTT
GATGAATTGA TGATCTTGTG TGATGCCCTA GAAGCGCAAA CAGAAGCTAG CAAGTCAGCA
CACCAAACCT TAGTTGAAAT CTTGCTAGGG GCATTACTGC TTCCTTCTGC TGATGCTAAC
AGCCCTGAGC CGGTAGAAAG CCCTGAGCTG TACTTTATAG AGAGCTGGCA ACGTGTTGCC
GAGCATTTCG ATACGCTATT CACCACCAGC GCCAGCATCG ACACGCTAAA GCAAACCATC
CTGCAACTCG CCGTCATGGG CAAGCTGGTA CCACAGGATA CTAATGATGA ACCAGCCGCT
AAGCTACTAG AGCGTATCGC CGCAGAAAAA GCGCAATTAA TAGCTGACAA GAAAATCAAA
AAGCAGAAAC CACTGCCAGC CATCACCGAT GAAGAAAAGC CGTTTGAACT ACCGAATGGA
TGGGAGTGGG CAAGGTTTGT AGATATAGCT TATCTTATTA CTGATGGTGC TCACCACACT
CCAAAGTACA TTGAGCATGG CATTCCATTT TTATCAGTTA AAGATATGAG TGATGGCAAA
TTAAATTTTG GTGATACTAG GTTTATTTCA GAGGAACAAC ATAAAGATTT GATTAAGAGA
TGCAATCCTC AAAAAGGTGA CCTTTTACTT ACTAAGATTG GGACAACAGG TGTTCCTGTC
TTAATTAATA CTGATAAAGA ATTTAGTATC TTCGTTAGCG TGGCTTTGAT TAAATTTTCA
ACCAATGAAA TTGATGGGAA CTTCCTTTCT CTTTTGGTTA AATCCCCATT AGTGAAAAAG
CAATCTCAAG AGGGTACCCA AGGTGTAGGT AATAAGAATT TAGTTCTCAA AACTATTTCA
AATTTTCCAT TATTATTTCC CCCTTTAAAT GAACAACACC GCATCGTTGC TAAAGTTGAT
GAGCTAATGG CGCTTTGCGA CCAACTCAAA GCCCGCTTAA GCGACGCCCA AACAATCCAA
CTCCACCTCA CCGACGCCAT CGTCGAACAG GCTATATAA
 
Protein sequence
MAEHALNKAV ELTTELTAEQ LITENLDIWT TAIEQKSASG RGSSKKFSLH GIKKLRELIL 
ELAVRGKLVP QASREARNSA SYEPASILLE RIASEKAQLV KDKKIKKPKA LPVISEDEKP
FELPKGWEWT RLQDIGHDLG QKTPDCEFTY IDVGAINKEL GFVEEPSILK ASDAPSRARK
LVKRNTVIYS TVRPYLLNIA VIGNDLSPEP IASTAFAIIH PLLGMNSSYI YRYLRSPCFI
NYVESVQTGI AYPAINDKQF FNGIIAIPPT EEQHRIVAKV DELMILCDAL EAQTEASKSA
HQTLVEILLG ALLLPSADAN SPEPVESPEL YFIESWQRVA EHFDTLFTTS ASIDTLKQTI
LQLAVMGKLV PQDTNDEPAA KLLERIAAEK AQLIADKKIK KQKPLPAITD EEKPFELPNG
WEWARFVDIA YLITDGAHHT PKYIEHGIPF LSVKDMSDGK LNFGDTRFIS EEQHKDLIKR
CNPQKGDLLL TKIGTTGVPV LINTDKEFSI FVSVALIKFS TNEIDGNFLS LLVKSPLVKK
QSQEGTQGVG NKNLVLKTIS NFPLLFPPLN EQHRIVAKVD ELMALCDQLK ARLSDAQTIQ
LHLTDAIVEQ AI