| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0486 |
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| Symbol | |
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| ID | 6114720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 674377 |
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| End bp | 675621 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641631974 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001758879 |
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| Protein GI | 170724853 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.012167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGATCATT TTCTCTATAA AAATGGTGAG CTGCTAGCTG AAGATTGTCA GGTTGCAGAG
CTTGCCCGCA CATACGGTAC CCCACTTTAC ATCTATTCTC GCGCGACGTT AGAACGTCAT
TGGCATGCGT TCGACAGCGC TGTGGCTAAT CATCCTCACC TTATCTGTTA TGCAGTCAAA
GCAAACTCAA ACATTGCCGT ACTCAATGTA CTGGCGCGTT TGGGTAGTGG ATTTGATATC
GTCTCTGGTG GTGAGCTCTC TCGCGTCATT GAGGCGGGGG GCGACCCTAA AAAGGTGGTT
TTCTCCGGTG TCGGAAAAAC TGTTGAAGAG ATGGAGATGG CACTGAATTT AGGGATACAT
TGTTTTAATG TTGAATCCGC TGCCGAACTT GAACAGCTTA ATCTTGTTGC ACTGAAATTA
GGTAAAATTG CACCAGTTTC ACTACGTGTA AATCCTGATG TTGATGCTGG TACTCATCCC
TACATATCGA CTGGACTAAA AGAGAATAAG TTTGGTATCG CCATGGATGA TGCTGAGGCA
ATATTTGCTC GTGCCCACGC CTTACCTGGT TTACAGGTCA AAGGTGTTGA CTGCCATATC
GGTTCACAGT TAACTGAAAT TAAACCTTTT CTCGATGCTA TGGATCGTAT TTTGGCGCTT
ATCGATCGTC TTGCAGAGCA AGATATCATT ATTGAGCATT TTGATGTTGG CGGGGGATTA
GGTGTCACTT ATGATGATGA AACACCACCT CAACCCGATG TTTATGCCAG TGCTTTGGTT
GAACGCTTAG GTGATAGAAA GCTCAAATTG ATTTTTGAAC CAGGTCGTGC GATTGCAGCA
AACGCAGGTA TTTTTGTGAC TCAAGTGCTT TACCTTAAAG GTAATAGCGA TAAGCATTTT
GCCTTGGTCG ATGGTGCGAT GAACGATCTT ATTCGTCCTT CACTCTACAG TGCTTGGCAG
AAGATAATCC CTGTTGTGCC GCGTGAGGGA GAGAGCCGTA ATTATGACAT CGTTGGACCA
GTTTGTGAGA CAGGTGATTT CTTAGGTAAA GAGAGGGAGC TGTGCCTCGA GCCACAAGAT
TATCTGGCTG TTCGTTCATC GGGCGCCTAT GGCTTTACAA TGTCTTCGAA CTATAATTCC
CGCCCTAGAG CTGCCGAGGT GATGGTTGAT GGTGAGCAGG CTCATTTGAT TCGCCAACGA
GAAAAGTTGT CACAACTCTG GCAAGGTGAG CAGTTACTGC CGTAG
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| Protein sequence | MDHFLYKNGE LLAEDCQVAE LARTYGTPLY IYSRATLERH WHAFDSAVAN HPHLICYAVK
ANSNIAVLNV LARLGSGFDI VSGGELSRVI EAGGDPKKVV FSGVGKTVEE MEMALNLGIH
CFNVESAAEL EQLNLVALKL GKIAPVSLRV NPDVDAGTHP YISTGLKENK FGIAMDDAEA
IFARAHALPG LQVKGVDCHI GSQLTEIKPF LDAMDRILAL IDRLAEQDII IEHFDVGGGL
GVTYDDETPP QPDVYASALV ERLGDRKLKL IFEPGRAIAA NAGIFVTQVL YLKGNSDKHF
ALVDGAMNDL IRPSLYSAWQ KIIPVVPREG ESRNYDIVGP VCETGDFLGK ERELCLEPQD
YLAVRSSGAY GFTMSSNYNS RPRAAEVMVD GEQAHLIRQR EKLSQLWQGE QLLP
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