| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0466 |
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| Symbol | |
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| ID | 6114696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 580324 |
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| End bp | 581442 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641631950 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001758859 |
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| Protein GI | 170724833 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.808341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT GGACCCTGAT GATGCTAATC ATTGCACTAC TTGCCTTCGG TTCAGTTATT
GGTTTTAACA TAATGGTTAA GGGAAAGATT GCCGACGCCA TTGCCAATAT GCCAGAACCA
GAGTCTCCTG TGACAGCGCT CGCGCTAACA CCTCAAAGTT GGCAACCAAC TATCGATGCC
ATCGGTTTTG TCGAGCCTAA TCAAGGTGTC ACCATTGCCA ATGAGCTTTC TGGTGTTATC
TCAAATATTA ACTTTGAGAA TGGTTCAGAA GTACAGGATG GACAAAGTCT TATCGTACTC
GACTCCGCCG TTGAACAAGC AAACTTAAAG AGCAAGATGG TTCAACTGCC CGCAGCCGAA
GCTGACTATC AACGATTAAC TCGCCTCTAT AAAAAGAACT CAGTATCAAA ACAAGACTTA
GATAATAGTC AGTCTAAGTA TCTCGCGCTG AAAGCCGATA TTGAGAGCTT AAAAGCCACC
ATAGATCGCC GCCAAATCGA TGCGCCTTTT GCAGGACTAG TAGGCATACG TAGCGTGAAC
TTAGGTGAAT ACCTCCAAGC TGGTACCGAT ATCGTTCGTT TAGAGGATAT CAGCACCATG
AAGATCCGCT TTACAGTGCC ACAAACTCAG CTACCTCGGA TCTCTAACGG CCAAACAATT
CACGTTTATG TCGATGCTTA TCCAGATCAC CCGTTCGAAG GCAAGATCTC AGCGATTGAG
CCTGCCGTCT TCTATCAAAG TGGTTTAATC CAAATTCAGG CAACCATCCC CAATATCGAT
GCAAAGCTGC GTAGCGGTAT GTTCGCCCGC GTAGCCGTTC TACTACCTGA GATGACGGAG
CAGTTTGTAC TGCCTCAAAC AGCAATCAAC TTCACCCTTT ACGGTAACTC CATCTACCTC
ATCCATGAGA GTCAAGAGGA GGGAGAAACC GTTAAACGTG TGCAACAGAT CAATGTAGAG
GTGCTCGAAC GTAATGGTAA CAACGCCCTA GTCAAAGGTC ATTTAGCGGC CAATGATCTC
GTCGTGACCT CAGGTCAGGT TCGTCTTAGC AACAACAGCA AAGTCAAAGT AACCGAGGAT
GATGCTTTAA CGCCTCCGGC TACTATGCCA CAACTATAA
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| Protein sequence | MKKWTLMMLI IALLAFGSVI GFNIMVKGKI ADAIANMPEP ESPVTALALT PQSWQPTIDA
IGFVEPNQGV TIANELSGVI SNINFENGSE VQDGQSLIVL DSAVEQANLK SKMVQLPAAE
ADYQRLTRLY KKNSVSKQDL DNSQSKYLAL KADIESLKAT IDRRQIDAPF AGLVGIRSVN
LGEYLQAGTD IVRLEDISTM KIRFTVPQTQ LPRISNGQTI HVYVDAYPDH PFEGKISAIE
PAVFYQSGLI QIQATIPNID AKLRSGMFAR VAVLLPEMTE QFVLPQTAIN FTLYGNSIYL
IHESQEEGET VKRVQQINVE VLERNGNNAL VKGHLAANDL VVTSGQVRLS NNSKVKVTED
DALTPPATMP QL
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