Gene Swoo_0346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0346 
Symbol 
ID6114575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand+ 
Start bp440529 
End bp441203 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content44% 
IMG OID641631833 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_001758742 
Protein GI170724716 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCCAT TTCTTATCGC CCCCTCTATT TTGTCTGCTG ATTTTGCCCG TTTGGGTGAG 
GATGTTGATG CCGTTCTTAA CGCAGGTGCC GATGTAGTTC ACTTTGATGT TATGGATAAC 
CATTATGTTC CTAACCTAAC CATAGGTCCT ATGGTGTGCC AAGCATTGCG AGATTACGGC 
GTGACAGCTG ATATTGATGT CCATCTTATG GTGAAGCCAG TCGATCGCAT TATTCCTGAC 
TTTGCAAAAG CAGGGGCTTC GATTATTACC TTTCATCCTG AAGCGAGTGA GCATTTAGAT 
CGCTCTCTAC AATTGATTAA AGAGTCAGGC TGTAAAGCGG GCCTGGTATT TAACCCTGCA 
ACACCACTGC ATTATTTAGA TCATGTGATG GATAAGCTCG ATGTCATCTT GTTGATGTCA 
GTAAACCCAG GTTTTGGAGG GCAATCTTTT ATTCCTTCAA CGTTAGATAA ACTGCGTCAG 
GTAAGAAAGC TTATCGATGA CAGTGGCTAC GATATTCGTC TTGAGGTCGA TGGCGGTGTT 
AAGGTCGATA ATATTGCTGA AATCGCTGCA GCAGGTGCAG ATATGTTTGT TGCTGGCTCG 
GCGATCTTTA ACAAACCTGA TTATAAAGCT GTGATCGATG AGATGCGTAG CGAACTTGCT 
AGTATAGAGT CTTAA
 
Protein sequence
MRPFLIAPSI LSADFARLGE DVDAVLNAGA DVVHFDVMDN HYVPNLTIGP MVCQALRDYG 
VTADIDVHLM VKPVDRIIPD FAKAGASIIT FHPEASEHLD RSLQLIKESG CKAGLVFNPA 
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPSTLDKLRQ VRKLIDDSGY DIRLEVDGGV 
KVDNIAEIAA AGADMFVAGS AIFNKPDYKA VIDEMRSELA SIES