| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0339 |
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| Symbol | |
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| ID | 6114568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 433601 |
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| End bp | 435649 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641631826 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001758735 |
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| Protein GI | 170724709 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.201727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGATCTT CTGCCGCGAC AAATACTGTA TTAAGTGTGC CATCGCTATC TAGGCTGGTG
GGCTGTTTAG CCCTTTTTAT CATTGGGATC TCCAATGCTG CTGCGTCTAA TAGATTAGTT
GATGTTAAGT ATCACGCTGT TGTTGACCAC CAACTGGAGC TTCAATTGGT GTTTGAGGAC
GAAGTTGATA AGCCTGAAAT AGAGCTTAAC GCTGAACCTG CACAGATCAT ACTGCTCTTT
AAAGAGAGTA TCTCTGGACT GGAAAAAGAC AAACTGCCAA TTAAGACTGT AGGTGTTGAG
TCTGTGAGTA TTAACCAGAC TAACGGTGCA ATGAGGCTGG TGGTCGATCT TGATAAGGTA
AAGGCATATA AAGGAAAGCT ATCTGGCAAT ACCTACAACA TCACAATAAA CGATGAGGTC
GCTGAACGAG ACGATAGTAG CGAAAATCCG TTTGTTAACT CAATCCAAAA TATCGACTTT
AGAAGAACGG CGGAAGGTGG CGGAGAGTTA ATCGTCAAGC TGAATAATAA TAGAGTCGCA
GCGAATGTAG AACAGGTAGG GGCTAAGTTA GAGCTTAAAC TTTACAACAC AGAGATAGGA
TCTGATTTTC TTTATGTGAT GGATGTGCAA GATTTTGCCA CTCCAGTAAG AAGCTTCGAA
ACTTTCAAAG AGGAGTTAAC CTCCCGTGTT CTTATCGATA TCTCAGGCGA GTATGAGTAC
AACTATCGCC AAGAGGAGGA CCTATTTAAA TTAAGCATTA ACAAAGCTGA GCGCATTGTG
GTCGCTAAAG AGGAGGAGAA ATACGATGGA AAGTCTCTTT CACTCAACTT CCAAAGCATC
TCTGTAAGGA CTGTACTGCA GATCATTGCC GATTATAACA ACTTTAATTT AGTGACCAGT
GACACCGTTG AGGGCGATAT TACCCTTAGA CTGGATGATG TGCCATGGGA TCAAGCGTTA
GATTTGATTC TTCAAACTAA AGGGTTAGAT AAGCGCATTG AAGGTAACAT TCTTATGGTG
GCGCCCAGAG AGGAGTTGGC CATTCGTGAG AGCCAGATGC TTAAAGATAT GCAGGAGGTG
AAAGAACTCT CTCCTCTCTA CTCTGAATAT ATTCAGATAA ATTACGCTAA AAGTGCCGAC
ATTGCTGAAC TGTTAAAAAG TACTGATTCA AGTTTATTGT CTTCTCGAGG CAGTGTTGCT
GTTGACGAAA GGACCAATAC ATTACTGATT AAAGATACAG AAGAGATCAT TGAGAATATC
CACCGATTAA TAAAAATCTT GGACATCCCA ATTCGCCAAG TATTAATTGA AGCTAGAATG
GTCACAGTGA AAGATGATGT ATCTGAAGAT CTTGGGATCA AGTGGGGAAT TAGTGATAAA
CAAGGTAGTA AAGGCACATC TGGCAGTATT GGTGGTGCAC AAGATATTGC TAATGGCATT
ATTCCCAGCG TCAATGATAG GTTAAATGTA AACTTTCCTG CCCCCGAAGC GGCTGCAAGT
ATTGCATTTC ATGTCGCAAA ACTTGCCGAT GGCACCATAC TCGATATGGA GTTGAGTGCC
CTTGAGCAGG AGAATAAAGG TGAGATTATT GCCAGCCCGC GCATTACCAC CTCGAACCAG
AAAGCTGCTT ACATTGAGCA AGGTGTCGAG ATCCCCTATG TTGAGGCAAG CTCAAGTGGT
GCTGCAACCG TTAGCTTTAA AAAAGCGGTT TTATCGCTTA GGGTTACACC ACAGATCACC
CCAGATAATC GTGTGATTCT GGATTTAGAG ATTTCACAAG ACTCTCAAGG TAAAGTGGTT
GCGACACCAT TGGGAGAGGT TGTTTCAATT GATACTCAGA GGATCGGTAC GCAAGTGTTG
GTCGATCATG GTGAGACCAT TGTATTGGGC GGTATCTATC AGCAGAACTT GATTAGCCGT
GTTTCTAAGG TGCCTGTTTT GGGTGATATT CCCTTTGTTG GCTTCCTATT TAGAAGCACA
TCGGATAAAA ATGAGCGACA AGAACTGCTC ATATTTGTGA CACCGAAAAT TATCTCTGAA
GAGATTTAA
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| Protein sequence | MGSSAATNTV LSVPSLSRLV GCLALFIIGI SNAAASNRLV DVKYHAVVDH QLELQLVFED
EVDKPEIELN AEPAQIILLF KESISGLEKD KLPIKTVGVE SVSINQTNGA MRLVVDLDKV
KAYKGKLSGN TYNITINDEV AERDDSSENP FVNSIQNIDF RRTAEGGGEL IVKLNNNRVA
ANVEQVGAKL ELKLYNTEIG SDFLYVMDVQ DFATPVRSFE TFKEELTSRV LIDISGEYEY
NYRQEEDLFK LSINKAERIV VAKEEEKYDG KSLSLNFQSI SVRTVLQIIA DYNNFNLVTS
DTVEGDITLR LDDVPWDQAL DLILQTKGLD KRIEGNILMV APREELAIRE SQMLKDMQEV
KELSPLYSEY IQINYAKSAD IAELLKSTDS SLLSSRGSVA VDERTNTLLI KDTEEIIENI
HRLIKILDIP IRQVLIEARM VTVKDDVSED LGIKWGISDK QGSKGTSGSI GGAQDIANGI
IPSVNDRLNV NFPAPEAAAS IAFHVAKLAD GTILDMELSA LEQENKGEII ASPRITTSNQ
KAAYIEQGVE IPYVEASSSG AATVSFKKAV LSLRVTPQIT PDNRVILDLE ISQDSQGKVV
ATPLGEVVSI DTQRIGTQVL VDHGETIVLG GIYQQNLISR VSKVPVLGDI PFVGFLFRST
SDKNERQELL IFVTPKIISE EI
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