| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0285 |
|---|
| Symbol | |
|---|
| ID | 6114511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 350786 |
|---|
| End bp | 353383 |
|---|
| Gene Length | 2598 bp |
|---|
| Protein Length | 865 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641631769 |
|---|
| Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|---|
| Protein accession | YP_001758681 |
|---|
| Protein GI | 170724655 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1049] Aconitase B |
|---|
| TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00846131 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCTAGAAG CATATCGTAA ACACGTCGAA GAGCGTGCTT CAGAGGGCGT AGTCCCTAAG
CCACTAGATG CCCAGCAAGT GGCAGAGCTA GTTGAATTAG TTAAGAACCC GCCAGCAGGT
GAAGAGGCAT TTATCCTCGA CCTGCTTGAG AACCGAATTC CACCAGGAGT AGATGAAGCT
GCTTATGTAA AAGCAGGTTT CCTGGATGCA GTCGCTAAAG GTGAGGTGAC ATCATCAATC
TTATCTTCTG CACGCGCAGT TGAACTGTTG GGCACTATGC AAGGCGGTTA CAATATTGAG
CCTTTAATTG CTCAACTGGA TGTTGAAGCA CAAGCGCCTC TTGCTGTTGA AGCACTCTCT
AAAACATTAT TGATGTTTGA TTCTTTCCAC GATGTGGTTG AGAAGATGCA AGCGGGTAAT
GAGTTTGCTA AACAGGTTGT TAACTCTTGG GCTGAAGCTG AGTGGTTCCT AAACCGTCCT
AAGCTTGAAG AGAAGATCTC GCTGACTGTA TTCAAAGTGA CTGGTGAGAC TAATACCGAT
GATCTTTCGC CAGCACCAGA TGCTTGGTCT CGCCCAGATA TTCCATTGCA TGCGTTAGCT
ATGCTAAAGA ATGCTCGTGA TGGTATCGTT CCTGATGAAG CGGGTGTGAT AGGTCCGATT
AAAGAGATTG AGCAGCTTAA AACTAAAGGT TTCCCATTAG TCTATGTGGG TGATGTTGTT
GGTACAGGAT CTTCTCGTAA GTCTGCAACT AACTCTGTGC TTTGGTTTAT GGGTGATGAT
ATTCCTAATG TGCCTAACAA GCGTGGTGGC GGTTTCTGCT TAGGTGGAAA AATTGCACCT
ATCTTCTTCA ATACCATGGA AGATGCTGGC GCACTCCCTA TCGAACTAGA TGTTAGCAAG
ATGGATATGG GCGATGTGAT TGATATCTAC CCGTACCAAG GTGTTGTTAA GCGTCACGAT
AGCGATGAAG TTATCTCTGA ATTCAAATTG AAAACAGATG TGTTGATGGA TGAAGTTCGT
GCCGGTGGAC GTATTCCGTT GATTATTGGC CGTGGACTCA CTTCACGTGC CCGCGAAGTA
CTTAAGCTTG AGCCATCAGA TGTGTTTGTA CTCCCACAAG ATGTTGCTGA CACTGGTAAG
GGATATACCC TTGCGCAGAA GATGGTTGGT AAAGCATGTG GTGTAACAGG TATTCGTCCT
GGTCAATATT GTGAGCCTAA AATGACTTCG GTTGGCTCTC AAGATACTAC GGGTCCAATG
ACGCGTGATG AGTTAAAAGA TTTAGCTTGT CTAGGTTTCA GTGCCGATTT GACGATGCAG
TCGTTCTGTC ACACTGCGGC TTATCCAAAG CCTGTAGATG TAAATACTCA CCATACACTA
CCTGATTTCA TTATGAATCG TGGTGGCGTT TCTTTACGTC CTGGTGATGG TGTTATTCAC
TCTTGGTTAA ACCGTATGTT ACTTCCTGAT ACCGTTGGTA CAGGTGGTGA TTCTCATACA
CGTTTCCCTC TCGGTATATC TTTCCCAGCA GGTTCCGGTC TTGTGGCTTT CGCTGCGGCG
ACTGGTGTTA TGCCATTGGA TATGCCTGAG TCAGTGTTAG TTCGCTTTAA AGGTGAGATG
CAGCCTGGTA TCACACTGCG TGATCTTGTA CATGCTATTC CACACAAAGC GATTGAGATG
GGTCTACTTA CCGTTGAGAA GAAAGGTAAA ATTAACTTCT TCTCTGGTCG TGTTCTTGAG
ATTGAAGGGC TTGAGAGCTT GAAAGTAGAG CAAGCATTTG AGCTATCTGA TGCTTCTGCT
GAGCGTAGTG CTGCAGGTTG TAGTATTAAG TTAGACAAAG AGCCAATTAT TGAATATCTT
AACTCTAACA TCGTGATGTT GAAGTGGATG ATTGCTGAAG GTTATGGCGA TCGTCGTACT
ATCGAACGTC GTATTACTGC TATGCAGGAG TGGCTAGCAA ACCCTGAGTT GATGTCAGCT
GATGAAGATG CTGAGTATGC TGCTGTGATT GAGATTGATT TGAATGACAT TAAAGAACCA
ATTCTTTGTG CACCAAACGA TCCTGATGAC GCTGTACTGC TTTCAGATGT AAAAGACACT
AAGATCGATG AAGTGTTCGT TGGTTCTTGT ATGACTAATA TTGGTCACTT CCGCGCTACA
GGTAAGATGC TAGATAAGTT TGCAAGCACT TTGCCTACAC GCTTATGGAT TGCTCCGCCA
ACTAAGATGG ATCGTGATCA GCTTACTGAA GAGGGTTACT ATGCTATCTT TGGTCGTGTT
GGTGCTCGTA TCGAGATCCC TGGCTGTTCA CTTTGTATGG GTAACCAGGC GCGTGTTGCT
GAAGGTGCGA CAGTAGTTTC TACTTCTACA CGTAACTTCC CTAACCGTTT AGGTACTGGC
GCAAATGTGT ATTTGGCATC TGCTGAGTTA GCTTCTGTTG CTGCACTGTT AGGGCGTCTG
CCATCGGCAG AGGAGTATCA GACTTATGCG AAAGAGCTGG ATGCTACCGC TGCAGATACC
TATCGTTACC TGAACTTCGA TAAGATTGAA TCTTATACCG AGAAGGCTGG CGAAGTTATC
TTCCAGTCTG CGGTTTAA
|
|---|
| Protein sequence | MLEAYRKHVE ERASEGVVPK PLDAQQVAEL VELVKNPPAG EEAFILDLLE NRIPPGVDEA
AYVKAGFLDA VAKGEVTSSI LSSARAVELL GTMQGGYNIE PLIAQLDVEA QAPLAVEALS
KTLLMFDSFH DVVEKMQAGN EFAKQVVNSW AEAEWFLNRP KLEEKISLTV FKVTGETNTD
DLSPAPDAWS RPDIPLHALA MLKNARDGIV PDEAGVIGPI KEIEQLKTKG FPLVYVGDVV
GTGSSRKSAT NSVLWFMGDD IPNVPNKRGG GFCLGGKIAP IFFNTMEDAG ALPIELDVSK
MDMGDVIDIY PYQGVVKRHD SDEVISEFKL KTDVLMDEVR AGGRIPLIIG RGLTSRAREV
LKLEPSDVFV LPQDVADTGK GYTLAQKMVG KACGVTGIRP GQYCEPKMTS VGSQDTTGPM
TRDELKDLAC LGFSADLTMQ SFCHTAAYPK PVDVNTHHTL PDFIMNRGGV SLRPGDGVIH
SWLNRMLLPD TVGTGGDSHT RFPLGISFPA GSGLVAFAAA TGVMPLDMPE SVLVRFKGEM
QPGITLRDLV HAIPHKAIEM GLLTVEKKGK INFFSGRVLE IEGLESLKVE QAFELSDASA
ERSAAGCSIK LDKEPIIEYL NSNIVMLKWM IAEGYGDRRT IERRITAMQE WLANPELMSA
DEDAEYAAVI EIDLNDIKEP ILCAPNDPDD AVLLSDVKDT KIDEVFVGSC MTNIGHFRAT
GKMLDKFAST LPTRLWIAPP TKMDRDQLTE EGYYAIFGRV GARIEIPGCS LCMGNQARVA
EGATVVSTST RNFPNRLGTG ANVYLASAEL ASVAALLGRL PSAEEYQTYA KELDATAADT
YRYLNFDKIE SYTEKAGEVI FQSAV
|
|---|
| |