| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0216 |
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| Symbol | |
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| ID | 6114439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 268302 |
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| End bp | 269237 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641631697 |
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| Product | PaaX family transcriptional regulator |
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| Protein accession | YP_001758612 |
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| Protein GI | 170724586 |
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| COG category | [K] Transcription |
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| COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
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| TIGRFAM ID | [TIGR02277] phenylacetic acid degradation operon negative regulatory protein PaaX |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0165647 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGCGTCAG AAGACAATTA TTTAAAATTC ATTAATCAAA GAGTTGAGAA GTCCAGTAGT
GGCCCCTCTA TGCTTGTGAC GCTATTTGGT GATTTAGTGT CTCAGCATGG GAATTGGATT
TGGCTTGGCA GTTTAATTAC CGGGTTAAAG CCCTTTGGCT ATAGTGAGCG ACTCATTAGA
ACCAGTGTAT TTAGATTAGT TAAAAGCGAT TGGTTGATCA CCAAAAAAGT AGGGCGTCGA
ACCTATTACG CATTAAGTGA GACGGCAAAA GCCCATCATG ACAAAGCAGC AAGAAGAATT
TATTCCTCTG AACCTTCGTC ACTAGCCGAT GCTTGGACAG TGGTCATTCC AATATTTGTA
CCCGATAACG TAAAAGAGAC ATTTAAGAAG CAGTTGCAGT GGTTGGGATT TAGTCCTTTG
ACCAACGGCG CTTATGCGCA TCTTGAGGTT GATAAACAGA GTTTAGAAGA CACCTTATTA
GAACTCGGCT TGAAAGATGC CGTCATCGTG TTGAGTTGCA AAGTCGATGG TTCACATTCT
AAAAATGTCT TTAAGCGTTT AGTTAAAGAG TATTGGGGCC TTGAAACCCT AGAGGCGAGT
TACAAAGAGT TTCTTGATGC GTACCGACCT TTAATCATCA AATTTAATAA AGGGAAGATG
CCAAGTGATG AAACTTGTTT TCTTCTCAGA ATACTCCTGA TCCATGAGTA CAGACGAATC
CTTTTGAAAG ATAAGCAGTT ACCAGAAGAC ATGTTACCCA ATGGTTGGGT TGGGTTTGAA
GCCCACGAAT TGGTCGGAAA ATTATACGCC CAACTAGCTC AAGCATCTGT CAATTATGCG
GTTGAAAATT TGGAGAATGC TCAAGGGCAC TTACCCTATG TTTCAGCTAA ATTCTGGCAA
CGATTTTTAC TTAATAAATT GTCCGTAGAG CCATAA
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| Protein sequence | MASEDNYLKF INQRVEKSSS GPSMLVTLFG DLVSQHGNWI WLGSLITGLK PFGYSERLIR
TSVFRLVKSD WLITKKVGRR TYYALSETAK AHHDKAARRI YSSEPSSLAD AWTVVIPIFV
PDNVKETFKK QLQWLGFSPL TNGAYAHLEV DKQSLEDTLL ELGLKDAVIV LSCKVDGSHS
KNVFKRLVKE YWGLETLEAS YKEFLDAYRP LIIKFNKGKM PSDETCFLLR ILLIHEYRRI
LLKDKQLPED MLPNGWVGFE AHELVGKLYA QLAQASVNYA VENLENAQGH LPYVSAKFWQ
RFLLNKLSVE P
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