Gene Swoo_0204 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0204 
Symbol 
ID6114427 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp253836 
End bp254687 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content45% 
IMG OID641631685 
ProductRNA polymerase factor sigma-32 
Protein accessionYP_001758600 
Protein GI170724574 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.89244e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.16818e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACTAATC AATCAATGGC ACTTACGGTT CCTCACGGAA GCGGTAGCTT AGAGGCTTAT 
GTCCACTCTG CGCACAACAT CTCGATGTTG GAGCCGGAGC AGGAGTATGA GTTAGCTAAG
CGATTACAAG AAACAGGTGA TCTTCAGGCT GCGAAACAGC TCATTATGTC TCACCTACGT
TTTGTAGTGC ATGTTGCTAA AGGTTACTCA GGTTATGGTC TTCCTCAGGC TGATCTTATC
CAAGAGGGTA ATATTGGTTT GATGAAAGCG GTGAAGCGTT TCGACCCAGA TGTGGGCGTT
CGATTGGTTT CATTTGCTGT GCATTGGATC AAAGCTGAAA TTCATGAATA TGTGCTGAAA
AACTGGCGCA TAGTAAAGGT TGCGACAACT AAAGCACAGC GTAAGTTGTT CTTTAACCTT
CGTAAATCTA AAAAACGTCT CGGTTGGTTT AGTGATGAAG AGGTTGGCAT GGTTGCCGAT
AACCTTGGTG TCTCTAAAGC CGATGTGACT GAGATGGAAT CGCGTATGGC GGCACAAGAT
CCTGCATTCG ATCTTGCCAG CGACAACGAT GATGACCAAG ACTTCTCTCC GGTTCACTAT
TTAGAGGACC ACTCCTCAGA TCTGGCATCA CAAGTTGAAA ATGATAACTT AGAGTCAAAT
AACCAAGCGC GCCTACTGTC AGCCATCAAA ACCTTAGATG AGCGTAGTCA GCATATCCTG
CAAGCACGCT GGTTAAATGA AGATAAGACA ACGCTACAAG AACTTGCTGC AACATACCAA
GTCTCTGCTG AGCGTATTAG GCAACTTGAA AAGAATGCTA TGAACAAGCT TAAAGGACGA
ATGGAAGCGT AA
 
Protein sequence
MTNQSMALTV PHGSGSLEAY VHSAHNISML EPEQEYELAK RLQETGDLQA AKQLIMSHLR 
FVVHVAKGYS GYGLPQADLI QEGNIGLMKA VKRFDPDVGV RLVSFAVHWI KAEIHEYVLK
NWRIVKVATT KAQRKLFFNL RKSKKRLGWF SDEEVGMVAD NLGVSKADVT EMESRMAAQD
PAFDLASDND DDQDFSPVHY LEDHSSDLAS QVENDNLESN NQARLLSAIK TLDERSQHIL
QARWLNEDKT TLQELAATYQ VSAERIRQLE KNAMNKLKGR MEA