| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0189 |
|---|
| Symbol | |
|---|
| ID | 6114412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 228085 |
|---|
| End bp | 231219 |
|---|
| Gene Length | 3135 bp |
|---|
| Protein Length | 1044 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641631670 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001758585 |
|---|
| Protein GI | 170724559 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGA AAATCATTGA AGCCTCCATT AAACAGCGAT TTATGGTGTT AATTATCACC
ATAATGATCA CTGTTTGGGG CATACAGGAG CTAAGAAATA CTCCACTTGA TGCCCTGCCC
GATCTCTCTG ATGTACAGGT GATCATCAAG ACCCCTTTCC CCGGGCAAGC ACCTAAGCTG
GTTGAGGAAC AGGTTACCTA TCCATTATCG ACCGCCATGC TCGCGGTACC GGGAGCCAAA
ACCGTTCGCG GTTACTCCTT CTTCGGTGAC TCCTATGTCT ATGTTATCTT TGAAGATGGC
ACCGATATCT ACTGGGCTCG CTCTCGAGTA TTAGAGTATC TCAATCAAGT TAGTAGTCGC
TTACCTCAAG GTGTACAACC GTCTTTAGGT CCTGATGCAT CAGGTGTTGG CTGGATTTTT
GAATATGCTC TGGTCGATCG CTCAGGTAAT TTAGACCTTT CACAGCTCAA AAGTCTGCAA
GATTGGTACC TCAAGCTTGA GCTTCAAACT GTCGCAGGGG TTTCAGAGGT TGCTACCGTT
GGTGGCATGG AGCAGACCTA TCAGATAGTG ATAGAGCCAG ATAAGCTAGC TATCTATAAG
CTTGATATTG CATCCATAAA AAATGCCATA GCCAAATCCA ATACTGAAGC TGGCGGCTCC
GTGATAGAGA TGGCGGAAGC TGAGTACATG GTGCGGGCCA AAGGGTACCG TCAAACCTTG
GATGACTTCA GAGAGATCCC ACTTGGGATA ACCAGTCCAT CTGGAACAGG CTTGTTACTC
AAAGATGTCG CAACGGTGCG TAAAGGCCCT GCATCACGAC GAGGTATCGC CGAGCTCGAT
GGTGAGGGAG AGGTTGTGGG TGGCATCATA GTGATGCGCT ACGGTGAGAA TGCGTTAGCT
ACAATAGAAG CGGTTAAGAC TAAGCTTGAG CAATTAAAGT CTGGTTTACC GGAAGGGGTC
GAGATCATCA CGACCTATGA CCGCTCTCAA TTGATTGAAA GTTCAGTTGA AAACCTTTTC
CACAAGGTCA TCGAAGAGAT GTTTGTTGTC GGTTTAGTCT GCCTGCTCTT TCTTTTGCAT
GCACGCTCAA CCTTAGTCGC AGTGATCACG CTTCCTTTAG CTATCCTCAT CGCCTTTATT
GTGATGAATA AGATGGGGGT GAATGCCAAC ATCATGAGCT TAGGCGGTAT CGCAATTGCC
ATCGGTGCCG TGGTCGATGG TGCGATTGTG ATGATTGAGA ACATGCATAA GCATCTGGAG
CATTTCAGAG AGAAGAATAA CCGCTCCCCT AATAATATTG AGCACTGGAA AATTGTTTCA
GAGGCTTCTA TTGAGGTGGG ACCCGCCCTC TTCTTCTCCC TTGTGATTAT TACTCTCAGC
TTTGTGCCCG TATTTGCACT AGAAGCTCAA GAGGGTCGCC TGTTTAGCCC ACTCGCTTAC
ACTAAAACAT TTGCAATGGC TGCGGCTGCA GTGCTTTCAA TCACCTTAGT GCCGATTCTT
ATGGGATTCT TTATTAAGGG GAAAATACCA AAAGAGAGCA GTAACCCGAT TAGCCGCTTC
TTGATTGCTA TCTATAAGCC TTCGCTTACA TTGGTATTGA AGTTTCCTAA GATGACACTG
GTTGTCGCCT TGATAGCCTT AATGAGTGCT TGGTACCCGC TAAGTAATAT CGGCAGTGAG
TTTATGCCTG AACTTGAGGA GGGAGATCTG CTCTATATGC CAACGGCTCT GCCGGGGATC
AGTGCCAGTA AAGCAGCTGA AATTCTGCAG CAAACCGATC GTTTGATCAA AACCGTTCCT
GAGGTTAAAC GTGTTTTTGG TAAGGTCGGC CGCGCAGAAA CAGCCACAGA TCCTGCGCCA
TTAACTATGC TGGAAACCAC CATCATGCTT AAACCACGGG ATGAGTGGCG CGAAGGGTTC
GAGCTTAAAG ATATCATAGA GCAGCTACAG CAAACTGTAA AAGTACCAGG GCTGACTAAT
GCTTGGGTAC AGCCCATTAA AACCCGAATC GATATGCTCT CTACAGGGAT AAAAACCCCT
GTAGGCATTA AGATCACAGG GGGGGATGTT GATGAACTGC AGAAGATAGG CACCAATATC
GAAGCGATTT TAAGCAAACT TCCGCATACC AAATCAGCCT ACGCTGAGCG TGTAGGTGGT
GGACGCTATA TTGATATCAC ACCTAAGTTA GATGTGGCCT CTCGCTACGA CATGACCCTA
ACCGATATTC AAGATGTGGT GCGTTATGCC ATTGGTGGTA TGGATATCGG TGAGTCAGTT
CAAGGCGCTG AGCGCTACCC CATAAACCTA CGCTATCCGC GAGAGTTAAG GGATAATATC
GAAAAGCTCA GAGAGCTACC TGTGATCACT AAAACAGGAC ATTACTTGCC TCTGCGCAAT
CTCGCTGATA TCGAAATCAC CGATGGTGCG CCCATGCTGA AAAGCGAAAA TGGTCGCCTA
ATCTCATGGG TCTTTGTCGA TATAGAGGGT ACCTCTATTG GTGAGTATAT CGAGCAAGCA
AAAACTGCTC TGGACAGCGA GCTTGTCGTA CCGCCAAGGT ATAGCTACGT TTTTGCCGGT
CAGTATGAGT ATATGCAGCG GGTAGATGCC AAGTTACAAA AGGTGATCCC TATGGCGCTA
GGCGTGATCT TTATCCTGCT GATGCTGACC TTTGGCTCGA CGCTGCAGGC GACTATTATC
ATGATGAGCT TACCTTTTGC TTTAGTCGGC AGTACCTGGC TTCTCTATCT CTTAGAGTTC
AACATGTCGG TTGCTGTTGC TGTGGGTATG ATTGCACTAG CAGGTGTTGC CGCAGAGTTC
GGGGTTGTGA TGCTGGTCTA CCTCAACAAT GCCATTAAAC ATAGAAAAGA GAGTGGTGGT
TATGAGGCTG TAAGCGATCT CAAAGAGGCG CTCATTGAAG GTGCTGTGAT GCGGATCCGT
CCTAAAGCGA TGACAGTAGC GACCATCTTT TTCGGGCTCC TGCCCATCAT GTGGGGGGCG
GGTTCGGGCA ACGATGTAAT GCAGAAGATA GCAGCACCTA TGGTTGGTGG TATGGTCACA
GCACCACTGC TGTCACTGTT TGTACTACCT GCACTTTATC TGCTTATCTA TTCACGTAAA
CTGAAGAAAG ACTAG
|
|---|
| Protein sequence | MLKKIIEASI KQRFMVLIIT IMITVWGIQE LRNTPLDALP DLSDVQVIIK TPFPGQAPKL
VEEQVTYPLS TAMLAVPGAK TVRGYSFFGD SYVYVIFEDG TDIYWARSRV LEYLNQVSSR
LPQGVQPSLG PDASGVGWIF EYALVDRSGN LDLSQLKSLQ DWYLKLELQT VAGVSEVATV
GGMEQTYQIV IEPDKLAIYK LDIASIKNAI AKSNTEAGGS VIEMAEAEYM VRAKGYRQTL
DDFREIPLGI TSPSGTGLLL KDVATVRKGP ASRRGIAELD GEGEVVGGII VMRYGENALA
TIEAVKTKLE QLKSGLPEGV EIITTYDRSQ LIESSVENLF HKVIEEMFVV GLVCLLFLLH
ARSTLVAVIT LPLAILIAFI VMNKMGVNAN IMSLGGIAIA IGAVVDGAIV MIENMHKHLE
HFREKNNRSP NNIEHWKIVS EASIEVGPAL FFSLVIITLS FVPVFALEAQ EGRLFSPLAY
TKTFAMAAAA VLSITLVPIL MGFFIKGKIP KESSNPISRF LIAIYKPSLT LVLKFPKMTL
VVALIALMSA WYPLSNIGSE FMPELEEGDL LYMPTALPGI SASKAAEILQ QTDRLIKTVP
EVKRVFGKVG RAETATDPAP LTMLETTIML KPRDEWREGF ELKDIIEQLQ QTVKVPGLTN
AWVQPIKTRI DMLSTGIKTP VGIKITGGDV DELQKIGTNI EAILSKLPHT KSAYAERVGG
GRYIDITPKL DVASRYDMTL TDIQDVVRYA IGGMDIGESV QGAERYPINL RYPRELRDNI
EKLRELPVIT KTGHYLPLRN LADIEITDGA PMLKSENGRL ISWVFVDIEG TSIGEYIEQA
KTALDSELVV PPRYSYVFAG QYEYMQRVDA KLQKVIPMAL GVIFILLMLT FGSTLQATII
MMSLPFALVG STWLLYLLEF NMSVAVAVGM IALAGVAAEF GVVMLVYLNN AIKHRKESGG
YEAVSDLKEA LIEGAVMRIR PKAMTVATIF FGLLPIMWGA GSGNDVMQKI AAPMVGGMVT
APLLSLFVLP ALYLLIYSRK LKKD
|
|---|
| |