| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0140 |
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| Symbol | vmrA |
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| ID | 6114363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 172705 |
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| End bp | 174099 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641631621 |
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| Product | multidrug efflux pump VmrA |
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| Protein accession | YP_001758536 |
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| Protein GI | 170724510 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAGCT ATCAATCACC ATCAGATCAG ACATCAAGCT CAATCAGCCG AACATTTTGG
CGCTACGCCA TTCCTTCGGT CGCGGCGATG CTGGTCAACG GTCTATATCA AATTGTTGAT
GGTATTTTTA TTGGCCAGTA CGTTGGCTAC CAAGGGCTAG CAGGTATCAA TATGGCTTGG
CCTATCATCT ATATTTTTGC TGGTATTGGC CTAATGATAG GCATGGGTTC AGGCAGCTTA
CTCTCCATCA ATCGCGGTGA GAATAGCCTA ACTGGCGATG ATAAAAAATT AGTATCAACC
AAAGTAAATA ACACCTTAGC CAGCGCCCTT CTGCTCGTTA TTGGCTTTGG ATTAATCGGC
TCTATAGTAT TAAATTTGAG TGTCGACACC CTTTTGCTCA TGCAAGGCGG TAGCGGGCAA
ACCCTACTGA TGGCGCAGCA ATACACCACC CCATTTACTT GGTCTTTGGT TTTTACAATT
CTTGCAGCTG CTATCCCTAT TCTTGTTCGC AATGATGAAA GCCCAAATAT CGCCACCGGC
TTGATGGTCA TGGGCGCATG TTTAAATATC GTGCTCGATT ATCTGCTGAT TGTACAATTT
AATATGGCCC TTCAAGGCGC AGCTATCGCC ACTATCTCGG CCCAGATATC TGTGTCTATT
TTAGGGATCG GCTACTTTAT CTCATCAAAA ACAGACTTTA AATTTAACGC CTCTGCATTC
ATTTTTAGTC CAAAGCTGGC CGGAAAGATC ATGATTTTGG GCGCCTCCAG TTTTGTCATG
TACCTGTATA CCAGCTTCGT ATTTGCGCTC CATAACCGCC TATTTATGGA GTATGGATCT
TCATTAACGG TCGGGGCATT TGCAATTGTT GGTTATCTAA TGGTGCTGTA CTACTTTGTC
GCAGAGGGAC TCGGTGAAGG GATGCAGCCT CCAGTCAGTT TCTTTTTCGG CGCTAGGGAG
CCAAAAAACA TCAAACGTAT GTTTCAGCTT GCCGCTAAGG TCTCAATCTC TGCGGGCCTG
CTTTGGGTGC TGATTTTAAA CCTGTTTCCC GAAGCCATTA TCGGGCTGTT TAACAGTGAA
GATAGAGCCT TGATGACAGA GACAATAGTC GGTATTCAAC TGCATCTATT TGCAATGTTT
CTCGATGGAT TTGTGGTACT GGCGATCATG TATTTTATGG CCGTAAACCA AGGTGGAAGA
TCCCTGTGGA TATCTGTTGG TAATATGGTG GTTCAACTCC CCTTCCTCTT TATCCTTCCG
AAGGTATTTG GAATAAATGG AGTATGGTTG GCGATGCCAG TGTCCAACTT AGTGATTTTT
GCCGTTGTCG CCCCTATGGT CTGGAGACAT CTTAATTCAG CCATAGAGTC AGGTAGGGAG
CTAAGTACTG CTTAA
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| Protein sequence | MHSYQSPSDQ TSSSISRTFW RYAIPSVAAM LVNGLYQIVD GIFIGQYVGY QGLAGINMAW
PIIYIFAGIG LMIGMGSGSL LSINRGENSL TGDDKKLVST KVNNTLASAL LLVIGFGLIG
SIVLNLSVDT LLLMQGGSGQ TLLMAQQYTT PFTWSLVFTI LAAAIPILVR NDESPNIATG
LMVMGACLNI VLDYLLIVQF NMALQGAAIA TISAQISVSI LGIGYFISSK TDFKFNASAF
IFSPKLAGKI MILGASSFVM YLYTSFVFAL HNRLFMEYGS SLTVGAFAIV GYLMVLYYFV
AEGLGEGMQP PVSFFFGARE PKNIKRMFQL AAKVSISAGL LWVLILNLFP EAIIGLFNSE
DRALMTETIV GIQLHLFAMF LDGFVVLAIM YFMAVNQGGR SLWISVGNMV VQLPFLFILP
KVFGINGVWL AMPVSNLVIF AVVAPMVWRH LNSAIESGRE LSTA
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