| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0132 |
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| Symbol | |
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| ID | 6114355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 159519 |
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| End bp | 162656 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641631613 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001758528 |
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| Protein GI | 170724502 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.14672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGTT ATTTTATCGA TCGCCCCATT TTTGCTTGGG TGATCGCCAT TATTATTATG
CTGGCGGGAC TGATGGCCAT TAAGGGCTTG CCCGTATCCC AGTATCCCAG TATTGCGCCG
CCAACGGTGG CTATTACCGC TAACTACCCA GGTGCTTCAG CTAAAACGGT TGAAGATACT
GTAACGCAGG TGATTGAGCA GCGTATGACT GGTCTTGACC ACCTGCGCTA TATCAAATCT
ACCAGTGATA GTTTTGGTAA TGCAGAGATC ACCCTAACCT TTAATGCTGA AGCAGATGGT
GACATCGCTC AAGTACAGGT GCAGAACAAG CTACAGTTGG CGATGCCTTT GTTGCCTCAA
GAGGTACAAG CACAAGGTGT AGGCGTCGCG AAAACCAGTG CTGGCTTCTT GATGGTACTG
GGTTTTGTTT CTGATGATGG CAGCATGGAT AAGGCGGATA TTTCCGATTA TGTTGCGGCT
AATATTCAAG ACCCAATGAG CCGTGTTGCA GGTGTGGGGG ACATTCAACT ATTTGGTGCA
CAGTACGCGA TGCGTATCTG GTTAGATCCA ATGAAGCTGA AGCAGTACTC ATTGACCAGC
GCCGACGTGG TGATGGCGAT CCGTGAGCAA AATGCGCAAG TTTCTGCCGG TCAGTTAGGT
GGTTCACCAG CGGTGATGGG ACAGGAGCTA AACGCGACTA TCTCGGCCCA GAGTCGTCTA
CAAACCGCTG AAGAGTTTGA GCAGATTGTA CTGAAATCCG ATGTGAGCGG CGCCAAGGTA
TTCCTCGGTG ATGTCTCAAC AGTCGAGGTC GGTGCAGAAA GCTACATGGT GAACTCTTTC
TATAATGGCA AACCTGCATC AGGTATGGCG ATCCAGCTGG CTGCTGGTGC TAACGCACTG
GATACAGCAG CGGCTGTTAT GGCTCAAATT GATGAGATGA AGCCATTCTT CCCACAAGGT
TTGAATGTGG TTCTGCCATT CGATACGACA CCATTCGTGA GTAAGTCTAT CGAAGGGGTT
GTACATACTC TTCTGGAAGC TGTAATACTG GTATTCTTTA TTATGTACCT GTTCTTGCAG
AACTTCCGCG CAACGCTAAT CCCTATGATT GCAGTTCCAG TGGTATTGCT GGGTACATTT
GGGATCTTGG CGGTGACGGG CTTCTCAATC AACACCTTGA CCATGTTTGC TATGGTGCTG
GCCATCGGTC TTCTGGTGGA TGACGCCATT GTTGTGGTGG AGAACGTCGA ACGGGTGATG
GCTGAAGAGG GCTGCAGCCC ACTGGAAGCG ACTCGTAAGT CGATGGATCA GATCACTGGT
GCCTTGGTCG GTATCGGTTT GACGCTGTCA GCCGTATTCG TGCCTATGGC ATTTATGTCT
GGCTCTACTG GTGTTATCTA CCGTCAATTC TCTATCACTA TCGTGTCAGC CATGGCGCTG
TCGGTATTGG TCGCTGTGAT TCTAACTCCT GCGCTATGTG CCACTATGCT CAAGCCTGTG
GAGAAGGGTC ATGGGTACAC CAACAAAGGC TTCTTCGGTT GGTTTAACCG TACGTTCGAT
CGCTGGACGT CACGTTACGA AGCAAGTGTC GCCGTTATTA TCAAACGCAC TGGTCGTGTA
TTTGTTATCT ATCTGGCGCT AGTGGTTGCT ACTGCTTGGG TATTTATGCG CTTACCAACG
GCATTCTTAC CGGATGAAGA TCAGGGCGTT ATCTTCTCTC AGGTGATGTT GCCAGCAAAC
GCAACTCAAG AAAGCACCAT GAAGGTGATG GATAAAGTGA GTGACTACCT GCTGGAATCT
GAAAAGGAAA ACGTACAATC TGTATTTGCG GTTTCTGGTT TTAGTTTCGC GGGTATGGGT
CAGAACATGG GTATCGCCTT TATTGGTCTG AAACCTTGGG ATGAGCGCTC TAACCCTGGT
CAGGATGTAC AGTCGATTGC CAATCGCGCT ATGGGCTACT TTATGACGAT TAAAGAAGCC
TTCGTGTTTG CATTTGTTCC TCCTGCGGTA TTGGAGTTGG GGACAGCGGG TGGTTTCGAT
CTCTTCCTAC AGGATAAGAA CGGTCAAGGC CATGATGCGC TTATTGCAGC CCGTAACCAG
TTGTTGGGCA TGGCGGGACA AGATCCTAAT CTAGTGGGTG TACGCCCTAA TGGTCAGGAA
GATGCACCTC AATACAAGCT TAATGTCGAT CATGCCAAGC TCCGTGCTTT AGGTCTTAGC
ATCAATGATG TGAACAGTGT ATTGGCAACG GCTTGGGGTG GTAGTTATGT GAATGACTAC
ATAGATCGCG GCCGTGTTAA GAAGGTATTT GTCCAAGGTG AAGCTGAGTC GCGCATGCAG
CCAGAAGATC TAGACAAGTG GTTCGTACGC AACGATCAAG GTGAGATGGT GCCTTTCTCA
GCTTTTGCTA CTGGTAGCTG GGAGTTTGGT GCACCGCGTC TGGAGCGTTT CGGTGGCTTA
CCTGCGGTAA ACATTCAAGG TGCAACCATA CCTGGTTTTA GTACTGGTGC TGCCATGGAC
AGTATTGAGA CGATGGCGGG TAAGTTACCT GCTGGTTTCG GTATCGCTTG GAATGGTCTC
TCCTATGAAG AACGCTTATC GGGTAATCAG GCGCCTATGC TATATGCCTT GTCTATCTTA
GTGGTGTTCT TGGTATTGGC GGCCCTGTAT GAAAGCTGGT CAGTACCTAT TTCGGTCATA
TTGGTGGTTC CGTTAGGGAT TATTGGCGCG CTGTTGGCGA CCTATGGTCG TGGCCTTAAT
AACGACGTAT TCTTCCAGGT GGGTCTGTTG ACCACTGTAG GTCTGGCGAC TAAGAACGCT
ATCTTGATCG TAGAGTTTGC GAAGGAATAC TATGAGAAGG GCGCCTCTTT GACCGATGCA
ACCTTGCATG CAGTAAGAGT GCGTTTACGT CCAATTCTGA TGACCTCACT GGCCTTCGGT
TTAGGTGTTG TGCCGTTAGC TATCAGTACT GGTGTTGGTT CTGGTGCACA AAACGCAATT
GGTACCGGTG TTGTGGGTGG CATGCTAAGT TCTACCTTCC TAGGTATCTT CTTTGTGCCA
CTATTCTTCG TGATTGTTGA ACGTATTTTC AGTAAGCGTG AGCAGAAAAA GAAAACAAGC
ACAGAAGTTG CTGAGTGA
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| Protein sequence | MARYFIDRPI FAWVIAIIIM LAGLMAIKGL PVSQYPSIAP PTVAITANYP GASAKTVEDT
VTQVIEQRMT GLDHLRYIKS TSDSFGNAEI TLTFNAEADG DIAQVQVQNK LQLAMPLLPQ
EVQAQGVGVA KTSAGFLMVL GFVSDDGSMD KADISDYVAA NIQDPMSRVA GVGDIQLFGA
QYAMRIWLDP MKLKQYSLTS ADVVMAIREQ NAQVSAGQLG GSPAVMGQEL NATISAQSRL
QTAEEFEQIV LKSDVSGAKV FLGDVSTVEV GAESYMVNSF YNGKPASGMA IQLAAGANAL
DTAAAVMAQI DEMKPFFPQG LNVVLPFDTT PFVSKSIEGV VHTLLEAVIL VFFIMYLFLQ
NFRATLIPMI AVPVVLLGTF GILAVTGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
AEEGCSPLEA TRKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVLVAVILTP ALCATMLKPV EKGHGYTNKG FFGWFNRTFD RWTSRYEASV AVIIKRTGRV
FVIYLALVVA TAWVFMRLPT AFLPDEDQGV IFSQVMLPAN ATQESTMKVM DKVSDYLLES
EKENVQSVFA VSGFSFAGMG QNMGIAFIGL KPWDERSNPG QDVQSIANRA MGYFMTIKEA
FVFAFVPPAV LELGTAGGFD LFLQDKNGQG HDALIAARNQ LLGMAGQDPN LVGVRPNGQE
DAPQYKLNVD HAKLRALGLS INDVNSVLAT AWGGSYVNDY IDRGRVKKVF VQGEAESRMQ
PEDLDKWFVR NDQGEMVPFS AFATGSWEFG APRLERFGGL PAVNIQGATI PGFSTGAAMD
SIETMAGKLP AGFGIAWNGL SYEERLSGNQ APMLYALSIL VVFLVLAALY ESWSVPISVI
LVVPLGIIGA LLATYGRGLN NDVFFQVGLL TTVGLATKNA ILIVEFAKEY YEKGASLTDA
TLHAVRVRLR PILMTSLAFG LGVVPLAIST GVGSGAQNAI GTGVVGGMLS STFLGIFFVP
LFFVIVERIF SKREQKKKTS TEVAE
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