Gene Swoo_0131 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0131 
Symbol 
ID6114354 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp158355 
End bp159506 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content47% 
IMG OID641631612 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001758527 
Protein GI170724501 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.02028e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCAAA TAGTGAAAAT TGCCTCTGTT ATAAGTGTGG CGTTATGGAT AACTGGCTGT 
GACCAAAAAC CAGAAGGTTC AGGTACAGCT GCAGGCCCAC AAAGTGTACC TGTAAATGTG
ATAAAAGTGG CAACTCAACC TCAGGAGATC ACCTTAGAGT TGCCAGGCCG AAGCCGTGCG
TATTTAGAAG CAGAAGTGCG TCCACAGGTC AGTGGTATTG TACTGGCTCG TAGTTTTAAT
GAGGGTGGAG AGGTCAAGAA AGGCCAGTCT CTTTATCAAA TTGATGCGTC GCAGTATGAA
GCTGCGCTAG TGAGTGCGAA GGCCGAGCTA GAGCGCGCAC AGGCAGCTGA AAAGTCGACT
AAGGCAACGG CTAAACGTTT TAGCTCACTG ATTAAAAGTA AATCTATTAG TCAGCAAGAC
TTTGATACTG CAGAGGCTAA CTACCTAGAA GCTAAAGCCA GCGTTGCTGT TGCAAAAGCG
GCAATTAACA CTGCTGAAAT TAACCTTGCA TACACTAAAG TAGAATCACC AATTTCAGGC
CGTATCGGCA AATCTAACGT GACTGCGGGT GCGCTAGTTG GTGCAGGTCA AGCGCAAGCA
TTAGCCAATA TTTCACAGCT TGATCCGATT AATGTTGATA TCGTTCAATC GAGCACGCAG
ATGCTACGCC TTAAGCAACG TATCGCCAGT GGCCAGTTGT TGAATGATAA TACAGCTCCA
GTTGCCCTGT TTTTGGAAGA TGGCAGCCGT TACAGCCATA AAGGTAAGCT GCAGTTCGCA
GAAGTTACCG TCAATGAAAA CACCGGTGCC GTGGTATTAC GTGCTGAGTT CCCTAACCCG
GATGGTTTAC TACTACCTGG TATGTTTGTT CGTACTGTAC TGACAGTGGG AACAGACCCT
GAAGCGATTT TGGTGCCGCA AAAAGCCGTG ACTCGTAACC CTAAGGGGCA GGGTGTTGCA
ATGGTGGTCA ATGCTGAGAA CAAGGTTGAG CCTCGTATTG TAGAAACTGC TGAGGTTATC
AATCATCAGT GGCTGATCAC TAAAGGCTTA GAGGCTGGCG ACCAACTGAT TGTTGAAGGT
CTGCAGAAGA TACGTCCTGG TGCGCCAGTT ACACCTCAGT TAATTTCTGA AGCGAAAGCT
CAAGCAGAAT AG
 
Protein sequence
MRQIVKIASV ISVALWITGC DQKPEGSGTA AGPQSVPVNV IKVATQPQEI TLELPGRSRA 
YLEAEVRPQV SGIVLARSFN EGGEVKKGQS LYQIDASQYE AALVSAKAEL ERAQAAEKST
KATAKRFSSL IKSKSISQQD FDTAEANYLE AKASVAVAKA AINTAEINLA YTKVESPISG
RIGKSNVTAG ALVGAGQAQA LANISQLDPI NVDIVQSSTQ MLRLKQRIAS GQLLNDNTAP
VALFLEDGSR YSHKGKLQFA EVTVNENTGA VVLRAEFPNP DGLLLPGMFV RTVLTVGTDP
EAILVPQKAV TRNPKGQGVA MVVNAENKVE PRIVETAEVI NHQWLITKGL EAGDQLIVEG
LQKIRPGAPV TPQLISEAKA QAE