Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0131 |
Symbol | |
ID | 6114354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 158355 |
End bp | 159506 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641631612 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001758527 |
Protein GI | 170724501 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000302028 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCAAA TAGTGAAAAT TGCCTCTGTT ATAAGTGTGG CGTTATGGAT AACTGGCTGT GACCAAAAAC CAGAAGGTTC AGGTACAGCT GCAGGCCCAC AAAGTGTACC TGTAAATGTG ATAAAAGTGG CAACTCAACC TCAGGAGATC ACCTTAGAGT TGCCAGGCCG AAGCCGTGCG TATTTAGAAG CAGAAGTGCG TCCACAGGTC AGTGGTATTG TACTGGCTCG TAGTTTTAAT GAGGGTGGAG AGGTCAAGAA AGGCCAGTCT CTTTATCAAA TTGATGCGTC GCAGTATGAA GCTGCGCTAG TGAGTGCGAA GGCCGAGCTA GAGCGCGCAC AGGCAGCTGA AAAGTCGACT AAGGCAACGG CTAAACGTTT TAGCTCACTG ATTAAAAGTA AATCTATTAG TCAGCAAGAC TTTGATACTG CAGAGGCTAA CTACCTAGAA GCTAAAGCCA GCGTTGCTGT TGCAAAAGCG GCAATTAACA CTGCTGAAAT TAACCTTGCA TACACTAAAG TAGAATCACC AATTTCAGGC CGTATCGGCA AATCTAACGT GACTGCGGGT GCGCTAGTTG GTGCAGGTCA AGCGCAAGCA TTAGCCAATA TTTCACAGCT TGATCCGATT AATGTTGATA TCGTTCAATC GAGCACGCAG ATGCTACGCC TTAAGCAACG TATCGCCAGT GGCCAGTTGT TGAATGATAA TACAGCTCCA GTTGCCCTGT TTTTGGAAGA TGGCAGCCGT TACAGCCATA AAGGTAAGCT GCAGTTCGCA GAAGTTACCG TCAATGAAAA CACCGGTGCC GTGGTATTAC GTGCTGAGTT CCCTAACCCG GATGGTTTAC TACTACCTGG TATGTTTGTT CGTACTGTAC TGACAGTGGG AACAGACCCT GAAGCGATTT TGGTGCCGCA AAAAGCCGTG ACTCGTAACC CTAAGGGGCA GGGTGTTGCA ATGGTGGTCA ATGCTGAGAA CAAGGTTGAG CCTCGTATTG TAGAAACTGC TGAGGTTATC AATCATCAGT GGCTGATCAC TAAAGGCTTA GAGGCTGGCG ACCAACTGAT TGTTGAAGGT CTGCAGAAGA TACGTCCTGG TGCGCCAGTT ACACCTCAGT TAATTTCTGA AGCGAAAGCT CAAGCAGAAT AG
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Protein sequence | MRQIVKIASV ISVALWITGC DQKPEGSGTA AGPQSVPVNV IKVATQPQEI TLELPGRSRA YLEAEVRPQV SGIVLARSFN EGGEVKKGQS LYQIDASQYE AALVSAKAEL ERAQAAEKST KATAKRFSSL IKSKSISQQD FDTAEANYLE AKASVAVAKA AINTAEINLA YTKVESPISG RIGKSNVTAG ALVGAGQAQA LANISQLDPI NVDIVQSSTQ MLRLKQRIAS GQLLNDNTAP VALFLEDGSR YSHKGKLQFA EVTVNENTGA VVLRAEFPNP DGLLLPGMFV RTVLTVGTDP EAILVPQKAV TRNPKGQGVA MVVNAENKVE PRIVETAEVI NHQWLITKGL EAGDQLIVEG LQKIRPGAPV TPQLISEAKA QAE
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