| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0066 |
|---|
| Symbol | |
|---|
| ID | 6114288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 80590 |
|---|
| End bp | 81237 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641631546 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001758462 |
|---|
| Protein GI | 170724436 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000605842 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000133916 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCC GCGATAAAAT AATCTACGCC AGCCTAGAGC TATTTAATGA GAAAGGTGAA
CGCAATATCA CCACTAACCA TATCGCCGCC CACTTAGGAA TAAGCCCTGG TAACCTCTAT
TATCACTTCC GTAATAAAGA GGACATCATT CGCTCCATCT TTAGCCTGTA TCAAGCACAT
CTAGAGACAA GCTTTCAGCC TTACGAAGGT GAGCCCGCCA CCATAGATCT ACTTATCGGT
TACTTCGATG CCATGTTCTA TGCCATGTGG GAGTTCCGTT TTATGTATGC CAATTTGACG
GATATCTTAA ATCGTGATGA GGAACTTAAG TCTCTCTATC TCGTCACTCA ACAGCAAGTG
CTTACTCGCT GCAGCCATGT GTTAAGCAAG CTCAATCAAG ATGGCGTTAT CGCTATCGAT
GAGGAGGAGA TCCCACACCT TGCCGAAACC ATACGTATGA TAGTGTGTTT TTGGATTGGC
TATAAACAGA CTCACTCGAG CCAGATGGAG ATCACTAAGT CATCTCTCTA TGAAGGCTTG
CTCAGAATAC TGATGATATC GAAAGCTTAC TCAACTTCAG AATCTCGCAC GACATTTGTC
AGACTGGAGC AGCACTACCG AGAGTTAGCA GCAGCCCCCA TCGAATAG
|
|---|
| Protein sequence | MKTRDKIIYA SLELFNEKGE RNITTNHIAA HLGISPGNLY YHFRNKEDII RSIFSLYQAH
LETSFQPYEG EPATIDLLIG YFDAMFYAMW EFRFMYANLT DILNRDEELK SLYLVTQQQV
LTRCSHVLSK LNQDGVIAID EEEIPHLAET IRMIVCFWIG YKQTHSSQME ITKSSLYEGL
LRILMISKAY STSESRTTFV RLEQHYRELA AAPIE
|
|---|
| |