Gene Swoo_0064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0064 
Symboltdh 
ID6114286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp78097 
End bp79122 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content49% 
IMG OID641631544 
ProductL-threonine 3-dehydrogenase 
Protein accessionYP_001758460 
Protein GI170724434 
COG category[R] General function prediction only
[E] Amino acid transport and metabolism 
COG ID[COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases 
TIGRFAM ID[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase
[TIGR00692] L-threonine 3-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00353875 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.4689e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAAGCAC TAAGCAAGCT TAAACCAGAA GAGGGGATCT GGATGGTCGA TGCTCCGAAA 
CCGGAGATGG GCCATAATGA TCTACTGATT AAGATTAGAA AAACCGCTAT TTGCGGCACT
GATGTCCATA TCTACAACTG GGATGAGTGG TCACAGAACA CGATTCCAGT GCCTATGGTC
GTCGGTCATG AATATGTCGG TGAAGTTGTC GATATCGGCC AAGAGGTCCG TGGGTTCTCT
ATTGGCGATC GCGTTTCTGG CGAAGGGCAC ATCACCTGTG GTCACTGCCG TAACTGTCGT
GCAGGCCGTA CTCACCTATG TCGTAACACG TCAGGCGTGG GCGTTAATCG TGATGGTGCC
TTTGCCGAAT ACTTAGTGAT CCCGGCATTT AACGCCTTTA AGATCCCCGA TGATATCTCT
GACGATCTGG CCTCTATCTT TGACCCATTT GGCAATGCGG TTCACACTGC GCTCTCTTTC
GATCTTGTGG GTGAAGATGT ATTGATCACA GGTGCAGGTC CTATCGGCAT TATGGCCGCA
GCTGTCTGTC GTCATGTTGG TGCACGACAT GTGGTCATCA CCGACGTTAA CGAGTATCGT
CTTGAGTTAG CCCAAAAGAT GGGAGCAACA CGCGCCGTCA ATGTGGCTAA AGAGGATCTT
AAAGATGTCA TGAGCGAACT TGGCATGACT GAGGGCTTCG ATGTCGGTCT TGAGATGTCT
GGTGTGCCTT CTGCTTTCCA CTCAATGCTT GATACCATGA ACCATGGCGG TAAAGTTGCC
ATGTTAGGTA TTCCTGGTGG CGATATGGCT ATCGATTGGA GTAAAGTTAT CTTCAAAGGG
CTCATCATCA AAGGGATCTA CGGTCGTGAG ATGTTTGAAA CCTGGTACAA GATGGCGAGC
TTAATCCAGT CAGGGCTAGA TATCTCACCT ATTATTACCC ACCATTACAA GGTTGATGAG
TTCCAACAGG GCTTCGATGC CATGCGTTCG GGTCAATCGG GTAAGGTTAT CCTAAACTGG
GATTAA
 
Protein sequence
MKALSKLKPE EGIWMVDAPK PEMGHNDLLI KIRKTAICGT DVHIYNWDEW SQNTIPVPMV 
VGHEYVGEVV DIGQEVRGFS IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNRDGA
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELAQKMGAT RAVNVAKEDL KDVMSELGMT EGFDVGLEMS
GVPSAFHSML DTMNHGGKVA MLGIPGGDMA IDWSKVIFKG LIIKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHYKVDE FQQGFDAMRS GQSGKVILNW D