Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0062 |
Symbol | |
ID | 6114284 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 76751 |
End bp | 77587 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641631542 |
Product | rhomboid family protein |
Protein accession | YP_001758458 |
Protein GI | 170724432 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.015636 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000313005 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGATAGAGA TAGGCAGGTT ACCTAATGAA AGAGCAGCTC AAGCTCTGGT CGATTATCTC AAAGGTGAGA ACGTCGACTG CAAAGTCATC CCCTCTGAAC AAGGTGTCAT TATAGCCGTA GTTCATGATC ACGATAGTCT GAAAGCCACC ATGGAGTTTC AGCAATTCGT GCTAAACCCC CACGACGATA AATATCTACA AGCCTCATGG GATAACGGTG ATACACGCTT AAAAATGGAT TATGGCGCGC CATCTCTGCA GTTGTTAACT CAGTTTATCT CAGGCGCTGG TCCTCTTACG CTGGCAGTCT TCTTTATCTG CATCTTAGTG TTTGCAGGCT TCAACTTAGG TTTTGCCAAC CCTATTTACG AATACCTCTC CTTCTTCGGT GCGGCTCCCG GCCCAGATCT CAGTCAATTT TGGCGGATTT TCACGCCGAT CTTGCTTCAC TTCTCCGCCC TGCACATCAT CTTTAATCTA CTCTGGTGGT GGTATCTAGG AGGAAAAATT GAGAACAAAC TTGGGGTTGC TCCGCTGTTT ATCTTACTGC TAGTGGCTGG AACCGTACCT AACCTCGTCC AGTACTACGT TAGCGGCCCT AACTTTGGTG GATTATCTGG CGTGGTGTAT GCCGTGGTCG GTTATACCTG GATCATGGGA GTAAAACGCC CAGAACTTGG TATAGGCCTG CCTCCAGCCT ATATTGGCTT TATGCTGTTA TGGCTCGTTT TTGGCTTTAC CGATCTATTC GGCCTCTCGA TCGCTAATTG TGCAAATGTA GGCGGGCTTG TAGTTGGTCT ACTGCAAGGA TTTATCGACA GTAAAAGACG AGTTTAA
|
Protein sequence | MIEIGRLPNE RAAQALVDYL KGENVDCKVI PSEQGVIIAV VHDHDSLKAT MEFQQFVLNP HDDKYLQASW DNGDTRLKMD YGAPSLQLLT QFISGAGPLT LAVFFICILV FAGFNLGFAN PIYEYLSFFG AAPGPDLSQF WRIFTPILLH FSALHIIFNL LWWWYLGGKI ENKLGVAPLF ILLLVAGTVP NLVQYYVSGP NFGGLSGVVY AVVGYTWIMG VKRPELGIGL PPAYIGFMLL WLVFGFTDLF GLSIANCANV GGLVVGLLQG FIDSKRRV
|
| |