Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0050 |
Symbol | |
ID | 6114271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 59053 |
End bp | 61485 |
Gene Length | 2433 bp |
Protein Length | 810 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641631529 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001758446 |
Protein GI | 170724420 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.237311 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGCGG ACTATTTTTA TGAGCGCAGT GAGAAACGGG AGGAGGCGAT CTCCACTGAA GTTGCTCATA TCGAGCAGCA CCTGATTAGA ATGCAGCACA TTGTTGAGTC TGCACTTTCT ATGCAGGATT CAGCAAGAAT AGAGCAGGAG ATCTCTTTAG CGGCAGCAGA TTTGAGTATC ATGGTTTATA CGGTACTAAA CAGTAAAAGC GTGATACGTT TTGCTAATCA TCTAGTATGG CGAGACAGTT TAGCGACTCA AGTTATCGAT GGTTATGATC TGGAGCTTCA TCGTCGTACG ACTAAGGAGA GCGCTCCGAC AACCTTCGTT AACTCAGAGC GGTTGTCGAT ACAGACTTAT TATCCTCTGC ACACTAACTT TCAAAATGAT AAAGCAGATC TCCATGATCT TATCTATATG GAGTATGACA TCTCCCCTTT GATAAATAAG GTAGATAATG ATGTGCAATC TAGCTTTATA CGATCAGTCG CTGTGAGTCT GATCGGTATC TTGTTATTCC TGCTTCTTAT GCATATCTAT CTGATACGCC CCTTGAGAAC TTTGGGGCTG AAAGCAAGTA GTTCGGCTCA GTTGCCTAAT GGCTTAGGTT CAAACGATAA ACCTGTTACT GCGATATTTA GTGAAGTGGT GGCGATTCAA GAGCACCTTA GAGATTTTTC AGAGAAATTA AGCCACAGCA AAAAACAGCT TAATGATAGC CAGAAGAGGT GGCTGTTTGC CGTTGAAATT TCGAAAAACG GTATTTGGGA CTGGAACTTA AAGAGTAATG AAGTGTTTCT TTCTGATCGG TGGAAAGAGA TGCTTGGATA TGAAGTCGAT GAGTTAAAGC ATGAGTTGAA TACCTGGCAG GAACTGCTGC ACCCAGAAGA TAAGATAGAA GCACTAAAGC TGTTAAATCA ATATCTCAAT AATGAGATGG AGGAGTTTGA GAGCGTACAT AGGCTTAGGC ATAAGGAAGG GCATTATATC TGGGTATTGG ACAGGGGAAT GGTTGTTGAT TGGGATGAAA CTGGAGCACC AGTTCGGATG ATCGGTACTC ACACTGATGT TTCTGATGAT GTGAGAAATC AACAAGCGAT TATTCACCAA ACTAAGCATG ATATTTTAAC TGGCTTGGCA AATCGAAGTG CCCTACTTGA TGAGCTTTAT GCGCTTAAGG TTCAGCAACA AGGTGATTTC GCGGCACTGT TTGTGATCGA TCTTGATAAT TTTAAGATGA TTAACGATGC CCTAGGTCAT CACAGAGGTG ACAGGATTCT AATTAAGGTG GCGGCGCGTT TATCGAGCCA TTTTTCTACT AATGTTTTGA TCGCTCGTTT AGGCTCTGAT GAGTTTGTTT TATTAGTTAA GTCATTAGGA GATGATCTGA CTAGCGTAAA CAGACGTACA GTCGCTTTGG CTAGTCAGAT CCGTCAGATG GTGGGTAGAA GTTTTCATAT TACTAACCAG ACAATAAACA TCTCTGCCAG TGTTGGGATA TGTGTTCTTA ATGATCTTGC CAATATGGAG CCGGAGCAGA TGCTGCAACA TGCTGATCTT GCAATGCATC AGGCAAAAGA GAAGGGGCGA GATGCCCATG CAATCTATAA CACTGAAATG GAGGAGATTG TGCAAAAGAG TTTGTGGATC AGCAGCGAGT TAAAACGTGC AATCGTAAAA GAACAGCTCT CTTTAGTATT CCAGCCGATC CTTGATAGAG ATGGTGAAAT TGTGTGTGCT GAAGTGTTAT TGCGTTGGAC ACACCCCGAG AAAGGCCCTA TTTCACCAGC TGAGTTCATC CCCGTTGCTG AGGGGAGCGG TCTGATTCAA GAGATAGGGT ATTGGGTGCT AAAGGAGACC TGTTACTTTA TCAATAGACT GAAAGCGCGA GGCATTGTTT TATCTTCAGT AGCCATAAAT GTCAGTGCAA GACAGTTCAA TCAAGATCTC TTTGTTGAAA ATCTACTTAC TGAGATCATG GAGCAGGGTC TTGCAGCCGA TACCATTGAG CTTGAGTTGA CCGAATATGC TTTATTGACC AATCTGGATA TCATCAAGCA GAGGATGCAT GTGTTGAAAG AGTCAGGGAT CTCAATTGCA ATTGATGACT TTGGTACAGG TTACAGTTCG TTAAGTTATC TGCAAACTCT ACCTCTATCT AGACTTAAAT TGGATGCGGC TTTTGTGAGT AAAATAGGCG AGAACGATGC CTCTAATGCT ATCGTTAAAG CTATCATCAA TATGGCTCAC AGCTTAAACC TCAAGGTTGT GGCTGAAGGG GTTGAAACGC AGGAGCAACA TCAGTTTTTG CGAGATCATG ATTGCGACAC ATTTCAAGGC TATCTGTTCA GTCGCCCCTT AGATGAAGAG GCGTTTATTC AATCTCTACT TAAACCAAAT ACAATTCAAG ATGGCAAGTT AACCTGCTTA TAA
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Protein sequence | MTADYFYERS EKREEAISTE VAHIEQHLIR MQHIVESALS MQDSARIEQE ISLAAADLSI MVYTVLNSKS VIRFANHLVW RDSLATQVID GYDLELHRRT TKESAPTTFV NSERLSIQTY YPLHTNFQND KADLHDLIYM EYDISPLINK VDNDVQSSFI RSVAVSLIGI LLFLLLMHIY LIRPLRTLGL KASSSAQLPN GLGSNDKPVT AIFSEVVAIQ EHLRDFSEKL SHSKKQLNDS QKRWLFAVEI SKNGIWDWNL KSNEVFLSDR WKEMLGYEVD ELKHELNTWQ ELLHPEDKIE ALKLLNQYLN NEMEEFESVH RLRHKEGHYI WVLDRGMVVD WDETGAPVRM IGTHTDVSDD VRNQQAIIHQ TKHDILTGLA NRSALLDELY ALKVQQQGDF AALFVIDLDN FKMINDALGH HRGDRILIKV AARLSSHFST NVLIARLGSD EFVLLVKSLG DDLTSVNRRT VALASQIRQM VGRSFHITNQ TINISASVGI CVLNDLANME PEQMLQHADL AMHQAKEKGR DAHAIYNTEM EEIVQKSLWI SSELKRAIVK EQLSLVFQPI LDRDGEIVCA EVLLRWTHPE KGPISPAEFI PVAEGSGLIQ EIGYWVLKET CYFINRLKAR GIVLSSVAIN VSARQFNQDL FVENLLTEIM EQGLAADTIE LELTEYALLT NLDIIKQRMH VLKESGISIA IDDFGTGYSS LSYLQTLPLS RLKLDAAFVS KIGENDASNA IVKAIINMAH SLNLKVVAEG VETQEQHQFL RDHDCDTFQG YLFSRPLDEE AFIQSLLKPN TIQDGKLTCL
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