| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0047 |
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| Symbol | |
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| ID | 6114264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 50928 |
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| End bp | 51749 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641631522 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001758443 |
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| Protein GI | 170724417 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00102259 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.175558 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATA GATATGCCGT TTTTGGAAAT CCCATATCCC ATAGTAAATC GCCTCTGATC
CACGGGATCT TTGCTAATGA AACTCAACAA GTTCTGGACT ATGAAGCGAT ACTTGCACCT
AAAGATGGCT TTGAGAGCTG TTTGAAACTG TTCTGGTCTC AAAACGGCAA AGGCGCAAAC
GTCACCGCCC CCTTCAAAGA GCAAGCTTTT AATCTCTGTG ATGAACTGAG TGAAGAGGCC
AAGTTAGCTG GTGCCGTCAA TACGCTAACC CTGCTCACTA ATGGTAAAGT GCGTGGAGAT
AACACTGATG GTCTAGGTTT GGTTGCCGAT CTGATAAGAA ATATCTCAAG TCTAGAGGGA
AAACGAGTGT TACTTCTTGG TGCTGGTGGT GCGGCAAGAG GTTCAGTACT TCCCCTACTG
AAAGCGGGAT TGAAGGTCTA TATACATAAC AGAACTCAGG AGAAAGCTGA AAAGTTAGTA
GAGATCTTTA CTCCTTTCGG TGATGTTAAA GCTCTATCTA TTGCTGAACT TATTGCGCCA
TTTGATATTA TTATCAACTC CACATCCTCA AGTTTAAGTG GTGATGTACC TGCAATACCA
AGTTGTGTGA TTGGTGTTGA GTCACTCTGT TACGACATGA TGTATAGCAA GGAGATGACC
TCATTTAATA GCTGGGCTCT GGAGCTAGGA GCTGTCAAAG CAATAGATGG TTTAGGTATG
CTTGTTGGTC AAGCTGCAAA GAGCTTTGAG TTGTGGCGAG GAGTGACACC TGAAGTCGAT
ACGACAATCA AACTGTTAAG AGAGAAGATT AAGAGCGAAT GA
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| Protein sequence | MTDRYAVFGN PISHSKSPLI HGIFANETQQ VLDYEAILAP KDGFESCLKL FWSQNGKGAN
VTAPFKEQAF NLCDELSEEA KLAGAVNTLT LLTNGKVRGD NTDGLGLVAD LIRNISSLEG
KRVLLLGAGG AARGSVLPLL KAGLKVYIHN RTQEKAEKLV EIFTPFGDVK ALSIAELIAP
FDIIINSTSS SLSGDVPAIP SCVIGVESLC YDMMYSKEMT SFNSWALELG AVKAIDGLGM
LVGQAAKSFE LWRGVTPEVD TTIKLLREKI KSE
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