| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0038 |
|---|
| Symbol | def |
|---|
| ID | 6114255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 42609 |
|---|
| End bp | 43118 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641631513 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001758434 |
|---|
| Protein GI | 170724408 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.346284 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAT TAAAAGTTTT ACGTTTTCCA GATGAGAAAT TACGCACGAT TGCCAAGCCA
GTAACAGAGT TTAATGCTGA CTTACAAACG CAGATCGATA ACATGTTTGA AACCATGTAC
GAAGAGAAAG GTATCGGGCT GGCAGCCACA CAAGTGGATT ACCATCACCA GCTGATAGTC
ATGGATCTTC AAGATGAAGT GGAAAGACCA AAAGTCTTCA TTAATTTGGA GATAGTTGCT
AGCAGCGGCC ACTTCGAAAA TGAAGAGGGC TGCCTCTCCG TTCCAGGCAT CTTCGCCAAT
GTTGAGCGCG CCGAGCATGT CACCATCAAA GCACTAGATC GCGAAGGTAA TGAGTTTACC
TTAGAGGCGG ATGGTCTATT TGGGATCTGC TTACAGCACG AATTAGATCA CCTTAAAGGT
AAATTGTTTG TCGATTACCT ATCGCCACTA AAGCGTCAAC GAATCAAGCA GAAGCTTGAG
AAAGCTGCCC GCCAAGAAAA GAAAGGATAG
|
|---|
| Protein sequence | MSLLKVLRFP DEKLRTIAKP VTEFNADLQT QIDNMFETMY EEKGIGLAAT QVDYHHQLIV
MDLQDEVERP KVFINLEIVA SSGHFENEEG CLSVPGIFAN VERAEHVTIK ALDREGNEFT
LEADGLFGIC LQHELDHLKG KLFVDYLSPL KRQRIKQKLE KAARQEKKG
|
|---|
| |