Gene Swoo_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0028 
Symbol 
ID6114245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand+ 
Start bp34092 
End bp34802 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content42% 
IMG OID641631503 
Producthypothetical protein 
Protein accessionYP_001758424 
Protein GI170724398 
COG category[I] Lipid transport and metabolism 
COG ID[COG2267] Lysophospholipase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.0206923 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGCTAG TACTATTGCC TGGAATGGAT GGAACAGGGG AGCTTTTTTC TTCGTTACTT 
TTTTCCCTAT CGGAATATGA GTGCGAAGTT ATAGCATTAC CGCAGACAGG GCCTCAAGAT 
TACGCATCAA TAACTGAATA TGTAAAAGAG AAATTACCCC AAAATGACTT TATCTTAGTG 
GCGGAGTCAT TTTCTGGCCC CGTGGCTGCT AGGCTAGCCA AAGAGGGGGC AGAGCATTTG 
CAAGGGGTTA TCTTCGTAGC CACTTTTTTA TCAAAACCTC ATTGGTTACT TCTCTCTATT 
GCCAGAGCTC TTCCTTTAAA GTTACTTTCG GCTTTGCCAT TTGCAAAACT CTTTGTTAAA 
GCGTTATTTC TAGGTTCTGC TGCAAGCAAT GAGTTGGTTG AACAGTTTCA ATCGATTGTT 
GACTCACTTC CCCCTCGGGT CATCAAGGCA AGACTAAGTT CAATGCTATC ACTCTCATTC 
TCTGCTGAGT TAATTGAGCT TCCAGTAGGA TATATTCAAG CGACTTCAGA TTATCTAGTG 
TCGTCAAATA AGGTCACTGA GTTTAGTGCC TGTTTTAGAG AGCTACAGGT TAGAAGCGTT 
GAGGGGCCTC ACTTTATACT GCAGGCAAAC CCAGCTAAAT CTGCTGAGGT AATCTCTGAG 
TTGGTTACTC TTTTTGGCAA GCAAACAGGT AAAGGGCGAG TTACTTTTTA G
 
Protein sequence
MKLVLLPGMD GTGELFSSLL FSLSEYECEV IALPQTGPQD YASITEYVKE KLPQNDFILV 
AESFSGPVAA RLAKEGAEHL QGVIFVATFL SKPHWLLLSI ARALPLKLLS ALPFAKLFVK 
ALFLGSAASN ELVEQFQSIV DSLPPRVIKA RLSSMLSLSF SAELIELPVG YIQATSDYLV 
SSNKVTEFSA CFRELQVRSV EGPHFILQAN PAKSAEVISE LVTLFGKQTG KGRVTF