| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0027 |
|---|
| Symbol | |
|---|
| ID | 6114244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 33463 |
|---|
| End bp | 34002 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641631502 |
|---|
| Product | protoporphyrinogen oxidase |
|---|
| Protein accession | YP_001758423 |
|---|
| Protein GI | 170724397 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4635] Flavodoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0184042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTA TTCTCGTACT GTATTACTCC CGAGGCGGGC ATACCGCTAA AATTAGTCGT
GCCATTGCTG AGCATATTGA GCATCAGGGG CATAAATCTC GGGTGATGCA TATTAGCGAA
GCGGTAAAAG AGGGATTAGA TTGGGCCAAG TATGACAGTG TCGCACTGGG AGCTTGTGTC
ATGTATGGCA GCTACGATAA AAGTGTCTTT GCATTTACGA CCGAGCATCA AGCAGCCCTT
AGCGAGAAAC CAAACAGTTT TTACAGTGTT AATGTGGTGG CTCGTAATCC AGAAAAACGT
GTTCCAGAGA ATAATAAATA CCTGCAGAAA TTCATTGAGC TTTCCCCTTG GAAGCCTAAT
GATGTCAAAG TGATCGCTGG TAAAGTAGAT TATCCAGCAT GGCGCTGGTG GGACAGACTC
GCTATTCAGC TAATTATGAA GATGACGAAT GGCCCAACTG ATCCTAAATC AGTCATCGAT
TACACCGACT GGGATGACGT TAAGCTTTAT GCTGAACATC TGATCCGTTT GGCTGATTAG
|
|---|
| Protein sequence | MKSILVLYYS RGGHTAKISR AIAEHIEHQG HKSRVMHISE AVKEGLDWAK YDSVALGACV
MYGSYDKSVF AFTTEHQAAL SEKPNSFYSV NVVARNPEKR VPENNKYLQK FIELSPWKPN
DVKVIAGKVD YPAWRWWDRL AIQLIMKMTN GPTDPKSVID YTDWDDVKLY AEHLIRLAD
|
|---|
| |