Gene Swoo_0027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0027 
Symbol 
ID6114244 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp33463 
End bp34002 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content44% 
IMG OID641631502 
Productprotoporphyrinogen oxidase 
Protein accessionYP_001758423 
Protein GI170724397 
COG category[H] Coenzyme transport and metabolism
[C] Energy production and conversion 
COG ID[COG4635] Flavodoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0184042 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTA TTCTCGTACT GTATTACTCC CGAGGCGGGC ATACCGCTAA AATTAGTCGT 
GCCATTGCTG AGCATATTGA GCATCAGGGG CATAAATCTC GGGTGATGCA TATTAGCGAA
GCGGTAAAAG AGGGATTAGA TTGGGCCAAG TATGACAGTG TCGCACTGGG AGCTTGTGTC
ATGTATGGCA GCTACGATAA AAGTGTCTTT GCATTTACGA CCGAGCATCA AGCAGCCCTT
AGCGAGAAAC CAAACAGTTT TTACAGTGTT AATGTGGTGG CTCGTAATCC AGAAAAACGT
GTTCCAGAGA ATAATAAATA CCTGCAGAAA TTCATTGAGC TTTCCCCTTG GAAGCCTAAT
GATGTCAAAG TGATCGCTGG TAAAGTAGAT TATCCAGCAT GGCGCTGGTG GGACAGACTC
GCTATTCAGC TAATTATGAA GATGACGAAT GGCCCAACTG ATCCTAAATC AGTCATCGAT
TACACCGACT GGGATGACGT TAAGCTTTAT GCTGAACATC TGATCCGTTT GGCTGATTAG
 
Protein sequence
MKSILVLYYS RGGHTAKISR AIAEHIEHQG HKSRVMHISE AVKEGLDWAK YDSVALGACV 
MYGSYDKSVF AFTTEHQAAL SEKPNSFYSV NVVARNPEKR VPENNKYLQK FIELSPWKPN
DVKVIAGKVD YPAWRWWDRL AIQLIMKMTN GPTDPKSVID YTDWDDVKLY AEHLIRLAD