| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0021 |
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| Symbol | fadB |
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| ID | 6114238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 26419 |
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| End bp | 28569 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641631496 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_001758417 |
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| Protein GI | 170724391 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0734076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00160004 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCTACC AAAGTCCTAC GATTCAGGTT GAGTTACTTG AAGACAATAT TGCTCGGTTA
TGCTTTAACG CTGCCGGCTC TGTCAATAAA CTAGACAGAG AGACAATAGA CTCACTCAAT
GCTGCATTAG ACGCAATTAA GCAAGACACG AATATTCAAG GTCTCGTTCT GACTTCAGGA
AAAGGCGCCT TTATTGTCGG TGCTGACATC ACTGAATTTC TCGGTCTATT TGCTCAAGAG
GAGAGTGTTC TTCTTCCTTG GATTGCTGAA GCAAACGTTG TTTTCAATAA AATTGAAGAC
CTGCCATTCC CCACGATCTC AGCCATTAAT GGCTTTGCAC TGGGTGGCGG TTTTGAAACC
GTACTCGCAA CGGATTTCCG TATTGCTGAT ACCACAGCCA AACTTGGCCT ACCAGAAACT
AAGCTTGGAT TAATTCCAGG TTTTGGCGGC ACAGTTCGTC TTCCCCGCCT TATTGGTGCC
GATAACGCAC TTGAGTGGAT CACAACTGGT AAAGATCATA AGCCAGAAGC CGCTCTTAAA
GTTGGTGCTA TCGACGCAGT TGTCGCACCA GAGAATTTAG AGGCATCGGC TATCGCCATG
CTGAAAGAAG CCTTAAGTGA AAAGTTAGAT TGGCAGGCAC GCCGCGCTAA AAAGCAAGCT
CCGCTAAACC TACCTAAGCT TGAAGCTATG ATGTCATTCG CCACCGCCAA GGGCATGGTA
TTTAAGGTTG CAGGCAAACA CTACCCTGCG CCAATGACAG CCATTAGCGT TATCGAGCAA
GCTGCTCGCA GTGAACGCGC TGACGCATTA ATGGTCGAGC ATCAAGCCTT TATCAAGCTC
GCTAAAACCG ACGTAGCACA AGCGCTAATC GGTATCTTCC TTAATGACCA ACTGGTCAAA
GGCAAAGCTA AGAAAGCGGG TAAGTTAGCT AAAAATGTCG ACAGTGCTGC TGTACTTGGT
GCCGGCATCA TGGGTGGTGG TATCGCATAC CAGAGTGCCA GCAAAGGCAC ACCAATTGTG
ATGAAAGATA TCGCACAGCC AGCGCTTGAT CTTGGTCTAG GTGAAGCGTC TAAGCTATTA
GCCGCTCAAA TTAAGCGTGG CCGCTCTACA CCAGAGAAGA TGGCTAAGGT ACTGAACAAC
ATCACCGCGA CACTGGACTA CGCGCCGGTT AAAGATGTCG ATGTTGTAGT CGAAGCCGTT
GTTGAGCATC CAAAAGTAAA ATCCATGGTG CTTGCTGAAG TTGAGCAAAA TGTCAGTGAC
GATGCCATCA TCACATCAAA CACCTCAACC ATCTCAATCA ACCTACTCGC TAAGAGCCTT
AAGAAGCCTG AGCGCTTCTG TGGAATGCAC TTCTTTAACC CAGTGCATAA GATGCCACTT
GTTGAAGTTA TCCGCGGCGA AAACAGCTCT GAAGAGACTA TCGCTTCGGT CGTGGCTTAT
GCCAGTAAAA TGGGTAAGAC ACCAATCGTT GTTAATGATT GCCCAGGTTT CTTCGTAAAC
CGCGTACTCT TCCCTTACTT TGCAGGCTTT AGCGGTCTAC TCGCCGATGG CGCAGATTTC
GCGGCAATCG ATAAGGTGAT GGAGAAGCAG TTTGGTTGGC CTATGGGTCC TGCATACCTG
CTTGATGTTG TCGGTATCGA TACAGGCCAT CATGCTCAAG CGGTAATGGC AGAAGGTTTC
CCTGATCGCA TGGGTAAAGA TGGCAAAGAT GCTATCGATA TCATGTTTGA CTCAGAGCGT
TTCGGTCAGA AGAACAACAA AGGTTTCTAC GCTTACTCAG TAGACCGCCG CGGCAAACCA
AAGAAAGATC TCGATCCTAC AAGCTATGAG CTACTTGGCG CAGAGTTTGG TGATCTTAAA
GCATTTGAGT CCGATGAGAT TATCGCTCGT ACTATGATCC CTATGATTAT CGAAACAGTT
CGTTGTCTCG AAGAGGGAAT TATCGCAACG CCTGCAGAAG CTGATATGGG GCTAGTATTT
GGTCTTGGCT TCCCACCATT TAGAGGTGGT GTATTCCGCT ATATCGATAC CATGGGTGTC
GCTAATTTCG TTGCACTTGC TGATAAGTAC GCCCACTTAG GTGGACTTTA CCAAGTGACA
GATGCGATGC GCGAACTCGC CGCTAATAAT GGCAGCTACT ATCAAGCTTA A
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| Protein sequence | MIYQSPTIQV ELLEDNIARL CFNAAGSVNK LDRETIDSLN AALDAIKQDT NIQGLVLTSG
KGAFIVGADI TEFLGLFAQE ESVLLPWIAE ANVVFNKIED LPFPTISAIN GFALGGGFET
VLATDFRIAD TTAKLGLPET KLGLIPGFGG TVRLPRLIGA DNALEWITTG KDHKPEAALK
VGAIDAVVAP ENLEASAIAM LKEALSEKLD WQARRAKKQA PLNLPKLEAM MSFATAKGMV
FKVAGKHYPA PMTAISVIEQ AARSERADAL MVEHQAFIKL AKTDVAQALI GIFLNDQLVK
GKAKKAGKLA KNVDSAAVLG AGIMGGGIAY QSASKGTPIV MKDIAQPALD LGLGEASKLL
AAQIKRGRST PEKMAKVLNN ITATLDYAPV KDVDVVVEAV VEHPKVKSMV LAEVEQNVSD
DAIITSNTST ISINLLAKSL KKPERFCGMH FFNPVHKMPL VEVIRGENSS EETIASVVAY
ASKMGKTPIV VNDCPGFFVN RVLFPYFAGF SGLLADGADF AAIDKVMEKQ FGWPMGPAYL
LDVVGIDTGH HAQAVMAEGF PDRMGKDGKD AIDIMFDSER FGQKNNKGFY AYSVDRRGKP
KKDLDPTSYE LLGAEFGDLK AFESDEIIAR TMIPMIIETV RCLEEGIIAT PAEADMGLVF
GLGFPPFRGG VFRYIDTMGV ANFVALADKY AHLGGLYQVT DAMRELAANN GSYYQA
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