| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0007 |
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| Symbol | |
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| ID | 6114224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 9178 |
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| End bp | 11913 |
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| Gene Length | 2736 bp |
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| Protein Length | 911 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641631482 |
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| Product | Na-Ca exchanger/integrin-beta4 |
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| Protein accession | YP_001758403 |
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| Protein GI | 170724377 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5276] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000289605 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGACTA GATTGCAGAT AAACCGAGTA ATTACAGCTA TATGGATTAT ATTTACTAGT
TGTTTAGTTT GTAACTCTGC TATTGCACAC TCGGAACATG ATAAAGCTCG CTTTGTCAGT
AATCAGGGGG AAGATACTGG TCTATGTGAC AAAGTATTGC GCCCCTGTAA GACCATAGCT
TATGCCGTAA AACACGCAAA TAAAGGCGAT CGTGTTTTAG TGGCTGATGG TGAGTACCAC
TTAAAAGATG TTGAAGATAT CTTTCTGCTC ACCAGTGGAA TAGTGCCTGT AATGGGTGGC
TATAACCGTT TTGACCACTA TCAATCCCAA GCTCCACAAC TCAATAAAAC TCTGCTTGTC
GGCGTTCCGA CTGAGTTTGC AGATGAGCTT AGACTGAAAG GGTTTAGAGT GATCAATGAT
GGTATTGGTC AGTATGGAAT TGAATTAGAT GAGATGCTCA GCGCTCATCA GTCACTGCAG
CAAAGCCATA GTAGTCAAAC ATGTGAGCAG GGAAAATCCG GTAACTTTAG CTGTGAGAAT
ATCGATCTCG TTTCCCATAT GGCTTTGAGT GCTTTTTCAT CTTCACCGGC CGCAGCTAAT
GATATTTGGG GTCATGTTGA TCTTAATACG GGTACAGAAT ACGCCTTGAT AGGGTTGAGA
AACGGCACCG CGGTAGTGAG TTTGGCCGAT CCTGCCAATC CGGTAGAGGT TGGAGTTATC
CCTGGTACTA GAACAAGTTG GCGAGATATC AAAGTATATC AATGGTTTGA TAGTGACACT
CTGCGTTGGA AGGCTCATGC TTATGTCGTA TCAGAAGAGG ATGCTGATCA GGTTCACATT
ATTGATTTGA GTCAGCTACC TAACTCTATT TCGAAAGTTG CGACCGATCG TGCCGTCACT
TCGGCGCATA ACGTCTACAT TAGTCATGTC GACTATACGA CCAATACAGC AATGGATGGT
TTGTCTCCAG CATTACACAT TGTGGGTCAA GATAATCAAG GGGGGGCATT TAAAACCTAT
GGGTTAACTG ATCCCAAAAA GCTAAATACG CTATTTTCCC ATTCAGGTGC AACGCGAGCT
AATTATACCC ACGATGCGGC TTCCATGGTG GTTGGTGATT CTCGGGCTCA ATCGAGTTGC
CAAACTGCTT TGTGTACTGT ACTCATGGAT TTTAATGAAA ACTCCATGAG TCTGTGGAAT
ATCTCTAATC ATTCTCAATC TACTCAGCTT GCCGATGTAA CTTACGATAA CGTTCACTAT
GTACATTCAG GTTGGTGGAG TGAGGATAAG CGCTATGTTT TTGTTCATGA TGAACTGGAT
GAGCAAAGGG CAGGCTTAAA TACCACATTA CGGGTATTTA ACTTAGATAA TCTTAAGTCA
CCTTCGCTAG TTAAGGTTTG GACGGGACCA ACTAAGGCGA TTGACCATAA CGGTTATGTA
CGTGGAAACC GTTACTATAT GTCTAACTAT CAGCGTGGTG TGACAATTCT GGATATCAGT
GACCCAACTG ATCCACAACA TGTGGGTTAC TTCGATACTT TTCCTGCATC TGATGGCAAT
GCATTTAATG GAGTGTGGGG TGTATATCCT TATCTACCTT CTGGTTTGAT CTTAGCGAGC
GACATAACAA GTGGTCTATA TGTGCTCAGA GATAATACTC AGAGTGCAAC CTATGGTTCG
AGCTCGTTCT CTACAAAAGA ATCTACTCTC GCTGCTGGTG AAAGTGTGAC TGTCACTGTT
AATAGGCCTG CTGGAACGGG AGTTGTTAGC GTGGGGTATG AAACGTTAGG CGGCTCGGGT
GTTATCAATC GAGATTTTGA ACCGCTAGTT GGACGTTTAA CCTGGGCGGC TGACGATAAC
GCTAGTAAGA GCATTGTGGT TAATACCATA GATAGCGGTC AAAATAAGGA GTTATTGGTT
TTTGTTCGTT TGTTTGATCC GCAAGGTGGC TTAACCCTCG TAGCACCTAG CTATCACACA
TTAAGAGTGG GGAAGAACCC TGCTAAACCT GGGGTATTAG GATTTGCTGA GACAACTCAG
AGCTTAAACG AAGGTGATAG CGCGACTAAT GTCTCTGTGG TTAGGCTCAC GGGAAGTGCT
GGTGAGGTTA AGCTTGATTA CAGCTTAGTG AGTGGAAGCG CTGTCGTCGG TGACGATATC
GCCGATACCA GTGGCCAATT AGTTTGGGCT GACGGAGATG ATGAAGCTAA AACAATTACG
ATTACGCCTA TTGAAGATAA CTTAGTTGAA GGCTCTGAAA CGTTTCAAGT TGTACTTAAA
AGTGTTGCAG GGAGTGAGCT CGGTGAATCT GAGTTAGCGG TGACCATAAT TGATAACGAT
AGAGCCAATA CGGCTCCAAC GGTCAATGCG GGTGAAAACC GTGAGGTGAA TGCTGGCGAA
ACAGTGACAC TGTTAGCGAC AGCAACTGAT GCTGAAAATG ACCCTATTAC TTACTTATGG
GAGCAGTCTG GAGGTGATAG CGTTTCACTG TCGGCAAATA ACCTTGCTGA GATTTCGTTT
GTCGCTCCAA GCCAGAGTAC GTCACTAAGC TTTACTGTAA CTGCTACGGA CTCTTTTGGT
GCGAGTTCGC AGGCTAGTGT GACTATTGAG GTTAAAGCTG CTGTCGTTGT CCCACCAACA
GAGCCAAGTG GCTCGGGCGG TGGAGGCGCG ATAACCTGGT TTGCACTATT TATGTTGTTC
TTAATTGCAG GTTACCGAAG GACAAAATTC GATTAA
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| Protein sequence | MSTRLQINRV ITAIWIIFTS CLVCNSAIAH SEHDKARFVS NQGEDTGLCD KVLRPCKTIA
YAVKHANKGD RVLVADGEYH LKDVEDIFLL TSGIVPVMGG YNRFDHYQSQ APQLNKTLLV
GVPTEFADEL RLKGFRVIND GIGQYGIELD EMLSAHQSLQ QSHSSQTCEQ GKSGNFSCEN
IDLVSHMALS AFSSSPAAAN DIWGHVDLNT GTEYALIGLR NGTAVVSLAD PANPVEVGVI
PGTRTSWRDI KVYQWFDSDT LRWKAHAYVV SEEDADQVHI IDLSQLPNSI SKVATDRAVT
SAHNVYISHV DYTTNTAMDG LSPALHIVGQ DNQGGAFKTY GLTDPKKLNT LFSHSGATRA
NYTHDAASMV VGDSRAQSSC QTALCTVLMD FNENSMSLWN ISNHSQSTQL ADVTYDNVHY
VHSGWWSEDK RYVFVHDELD EQRAGLNTTL RVFNLDNLKS PSLVKVWTGP TKAIDHNGYV
RGNRYYMSNY QRGVTILDIS DPTDPQHVGY FDTFPASDGN AFNGVWGVYP YLPSGLILAS
DITSGLYVLR DNTQSATYGS SSFSTKESTL AAGESVTVTV NRPAGTGVVS VGYETLGGSG
VINRDFEPLV GRLTWAADDN ASKSIVVNTI DSGQNKELLV FVRLFDPQGG LTLVAPSYHT
LRVGKNPAKP GVLGFAETTQ SLNEGDSATN VSVVRLTGSA GEVKLDYSLV SGSAVVGDDI
ADTSGQLVWA DGDDEAKTIT ITPIEDNLVE GSETFQVVLK SVAGSELGES ELAVTIIDND
RANTAPTVNA GENREVNAGE TVTLLATATD AENDPITYLW EQSGGDSVSL SANNLAEISF
VAPSQSTSLS FTVTATDSFG ASSQASVTIE VKAAVVVPPT EPSGSGGGGA ITWFALFMLF
LIAGYRRTKF D
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