Gene Swoo_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0003 
SymbolrecF 
ID6114220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3127 
End bp4224 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content43% 
IMG OID641631478 
Productrecombination protein F 
Protein accessionYP_001758399 
Protein GI170724373 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00186248 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.80359e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCCTGA CACGTCTTCA TATCGAAACC TTTCGAAATA TTAGTTCTGC TCAACTGCAT 
CCCAGTGACG GTTTAAATCT GATTTATGGG CAAAATGGCA GTGGTAAAAC GAGTGTGCTT
GAGGCGATCT ACTTTCTGGG AATGGGGCGC TCCTTTCGGA GTCATCTATC TCAAAGGGTC
ATCCAGCACC AAGATGACAA ATTAACCCTG TTTGCCAATC TGAGTTTGGG TGAGCAGGAG
AGTAAAATCG GTTTGCGCCG TTTTAGAAGT GGCGAAACCG AGGTTAAGAT CAATGGCGAT
AAGATAAAGC GTTTATCGAC CTTAGCCGAG ACTTTACCCA TTCAGGTGAT CACGCCAGAG
AGTTTTTCTT TGCTGTTTGA GGGGCCGAAA TCGAGACGTC AGTTTATCGA TTGGGGAGCG
TTTCATAGTG ATAAAAGTTT TCACTCGGCA TGGGCCAATG TGAAGCGAAT TTTAAAGCAA
AGAAATCAGC TACTTAAAAA TCAAGTTTCC TATAGCCAGA TTCAATTTTG GGATAAGGAG
TTGGTGCGTT ATTCTGAGCT GGTAACCCTG ATACGAAAAG AATATGTAGA CTCGTTAAAT
GAACAACTTA AGGGTATAAT CGTAGAGTTT TTACCTCAGG TTGAAGTGAA AGTTTCATTT
ACACGTGGTT GGGACAGTAA AACGGATTTT GGACAACTGC TCGAGACGCA ATATCTGAGA
GATGTTGCGG CGGGAAATAC AGGTAGTGGT CCCCATAAAG CCGACTTACG ATTGCGTGTT
GGCACCTTGC CCGTACAAGA TGCCTTGTCT AGGGGTCAAT TGAAATTGTT AGTCTGTGCA
TTACGTATTG CACAGGGAAA GTTGCTAAAA CAACAAACAG ATAAAAATAG TATTTATCTG
GTGGATGATC TTCCATCGGA ATTGGATGCG AAGCACAGGC AACTATTGTT GCAGCAATTG
ATGGATACCG GCGCACAGAT TTTTGTCACC GCTATCGATC CTGCAGCGAT AGTCGATTCG
TTAACCACAC CACCAAGTAA GATGTTCCAT GTGGAACAGG GGTGTGTAAC GGTAATAGAT
AAACCGACGA GAGAATAA
 
Protein sequence
MSLTRLHIET FRNISSAQLH PSDGLNLIYG QNGSGKTSVL EAIYFLGMGR SFRSHLSQRV 
IQHQDDKLTL FANLSLGEQE SKIGLRRFRS GETEVKINGD KIKRLSTLAE TLPIQVITPE
SFSLLFEGPK SRRQFIDWGA FHSDKSFHSA WANVKRILKQ RNQLLKNQVS YSQIQFWDKE
LVRYSELVTL IRKEYVDSLN EQLKGIIVEF LPQVEVKVSF TRGWDSKTDF GQLLETQYLR
DVAAGNTGSG PHKADLRLRV GTLPVQDALS RGQLKLLVCA LRIAQGKLLK QQTDKNSIYL
VDDLPSELDA KHRQLLLQQL MDTGAQIFVT AIDPAAIVDS LTTPPSKMFH VEQGCVTVID
KPTRE