Gene Swoo_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0002 
Symbol 
ID6114219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1805 
End bp2905 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content47% 
IMG OID641631477 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_001758398 
Protein GI170724372 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.36085e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value9.17615e-09 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAATTTT CAATTGATAG GGACGCCCTA TTAAAGCCGT TGCAACTCGT TACAGGCGCG 
GTGGAGAGAC GACATAACTT ACCCATCCTG GCAAACCTTT TAGTAGAAGT GAGTGGTCAC
TCACTTAAGA TGACCGGAAC CGATTTAGAA GTTGAATTGG TTGGCCAGGT TCAGCTCGAA
GGCGAGGTCC AAGAGGGACG CACCACGATT CCGGCGAAGA AATTCCTCGA TATTGTTAAA
TCATTACCCG ATCAAGTTGA GCTTAAAATT GAGCAACAGG AAAATCGCCT GTTACTCCGC
TCTGGTCGTA GTCGCTTTAC CTTAGCCACG CTTCCGGCGG AAGAGTATCC CAATGTTGAG
GCATTCCAGG CTGAGATTGA GTTTACAATT AATCAGGGCA CATTGAAGTC GCTGATCGAT
GCCACTCAAT TCTCTATGGC TAACCAAGAT GTTCGCTATT ACCTTAATGG CTTGTTGCTT
GAGACTGAGG GCAATGTGCT GCGTGCCATT GCGACCGACG GTCACCGCTT GGCGTTAAGT
CACAGACAGA TACAAGATAC CTTGCCTGAA AAGCAGGTTA TCGTTCCTCG TAAAGGTGTT
GTTGAGCTTC AGCGTCTTTT TGAAGGTGAA GAGTTGGATA TCACTATTGC GATTGGTGAC
AACGCAATTA GAGCGACGAC AGCAAGCGCT GTGTTTACCA GTAAGCTGGT TGATGGCCGT
TTCCCTGATT ATCGTCGAGT TCTGCCTAAG GGCGGCGATA AGGTCGTGAT TGCGAGCCGT
AATCATCTAA AACAAGCACT ACTTCGTGCC TCGATTCTGT CGAATGAGAA GTTCCGTGGT
GTGCGTGTTC AGCTTGAAGA GAACTTAATT AAGATCACTG CCAATAACCC TGAACAGGAG
GAGGCGGAGG AGATCTTAGA TGTGGAGTAT GAGAATACAC CGCTTGAGAT TGGCTTTAAT
GTGAGTTACC TGCTTGATGT GCTCAATAAC CTACCCTCGG ATGATGTGCG TATCACCTTA
ATTGATGGCA ACTCTAGTGC CTTGATTGAG AATCACATCG AAGAGGACTC TATGTATGTT
GTGATGCCGA TGCGTCTGTA G
 
Protein sequence
MKFSIDRDAL LKPLQLVTGA VERRHNLPIL ANLLVEVSGH SLKMTGTDLE VELVGQVQLE 
GEVQEGRTTI PAKKFLDIVK SLPDQVELKI EQQENRLLLR SGRSRFTLAT LPAEEYPNVE
AFQAEIEFTI NQGTLKSLID ATQFSMANQD VRYYLNGLLL ETEGNVLRAI ATDGHRLALS
HRQIQDTLPE KQVIVPRKGV VELQRLFEGE ELDITIAIGD NAIRATTASA VFTSKLVDGR
FPDYRRVLPK GGDKVVIASR NHLKQALLRA SILSNEKFRG VRVQLEENLI KITANNPEQE
EAEEILDVEY ENTPLEIGFN VSYLLDVLNN LPSDDVRITL IDGNSSALIE NHIEEDSMYV
VMPMRL