| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrad2831_1647 |
|---|
| Symbol | |
|---|
| ID | 6137675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium radiotolerans JCM 2831 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010505 |
|---|
| Strand | + |
|---|
| Start bp | 1755050 |
|---|
| End bp | 1758646 |
|---|
| Gene Length | 3597 bp |
|---|
| Protein Length | 1198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641627353 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_001754325 |
|---|
| Protein GI | 170748065 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0790633 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC CTCAGCCGAA GCCCCCCGCC CCCGCCGCCA AGCCGCCGGT CGCGCGCTTC
GCGCTGCCGA AATCCTCCGC GCTCGCCCGG GCGATCGACG CCCTCAAGCG CGGCGACAGC
CCGGTCCTGG CGAACGCCCC GGAGGGCTTC GACGCGCTGG CGCTCGCCGA CCTCGCCCGT
GCCCTGGCGC CCACCGTCGA CGCACCGGCC GTGCTGGTGC ACGTGGCGCG CGATTCCGGG
CGCTCGGCCG CGTTCCAGGC GGCTTTGGGC TTCGTCGCGC CCGAGATGGA CGTGATGAGC
CTGCCGGCCT GGGACTGCCA GCCCTACGAC CGGGTCTCGC CGACCACCGC CGTCGCCGCC
GCCCGGATGA CGGCGCTCGC CCGCCTCGCC CGCACCCGCT CGGCCGAGGA CAGGCCGCGC
ATCCTCTGCA CCACCGTCAA CGCCCTGGTG CAGCGGGTCC CACCCCGCGC CCACATCGCC
AAGGAGGCGT TCTCGGCGGC GATCGGCAAC GTCGTGGCAA TGGACGACGT GGTGGCCTGG
GTCGAGGCCA ACGGCTTCCT GCGCACCGGG ACGGTGCGCG ACACCGGCGA GTACGCGGTC
CGCGGCGGCA TCCTCGACCT GTCGCCCCCG GGCCTGCCGG CCCCGATCCG CCTCGACTTC
TTCGGCGACA CGCTGGAATC GATCCGCGCC TTCGACCCGG AGACGCAGCG CACCACCGGT
CAGCTCCGCT CCCTCGACCT GATGCCGATG AGCGAGGTCC AGCTCACCAC CGAGACGATC
CGGCGCTTCC GCCAGAACTA CATCCAGAGC TTCGGCGCGG CGACCCGGGA TGACCGGCTC
TACGAGACCG TGAGCGAGGG GCGGCGCTAC GCCGGCCTCG AGCACTGGAT GCCGCTGTTC
TACGACCACC TCGACACGCT GTTCGACTAT CTCGGCGGCG TGCCGCTGGT CTTCGATCCC
CAGGTGGAGG ACGCCGCCGC CGAGCGGATC AGCCTCGTCC AGGACTATTA CCAGGCCCGC
GAGGGCGCGA TGAAGACGCC GCAGCCCGGC GTCGCCCCCT ACAAGCCCCT GCCGCCCCGC
GCCCTCTACC TGACGCCGAA CGAGCTGAAG GAGCGGATCG CCACCGCCAC CGTGGCGCGG
CTGACGCCCT TCGCGCAGCC CGAATCGCCC GAGCGCGCCG TGATCGATTG CGGCGCCAAG
GCCGGACGAA GCTTCGCCCC CGAGCGGGCC GACGAGACTG CCAGCGTGTT CGACGCCGCG
GTGGCGCATA TCCGCGATCT CCAGGGATCC GGTCATCACG TGATCCTGGG AGCCTGGTCC
GACGGCTCCC GCGACCGGCT CTGCGGCGTG CTCACCGACC ACGGCCTCAG GAAGCCCGTG
GCGATCACCC GGCTCACCGA CGTCTACGCG CTGAAGCGCG GCACCGACGC GGCGGTGGCG
GTCTGGGGCC TGGAGGCGGG CTTCACCGCG GGCGAGCTGG CCGTCGTCTC CGAGGGCGAC
ATCCTGGGCG ACCGGCTGGT CCGCCAGAAG CGCAAGGCCA AGCGGCCCCA GGACGTGATC
CTGGAGGTGC AGGCGCTCCA GCCGGGCGAC CTCGTGGTCC ACGCCGACCA CGGCATCGGC
CGCTTCGTCG GCCTCAAGAC GATCCACGCC GCGGGCGCCC CGCACGACTG CCTGGAACTG
CAGTATACCG GCGGCCTGCT GCTCCTGCCG GTGGAGAACA TCGAGCTCCT GACCCGCTAC
GGCTCGGAGG ATTCCGAGGT CGCCCTCGAC CGCCTCGGCG GCGGCGCGTG GCAGGCCCGC
AAGGCCAAGA TGAAGCGCCG CATCCTCGAG ATGGCGGGCG AGCTGATCAA GGTCGCGGCC
CAGCGCTTCG TCCGCAAGGC CCCCGCGCTG CAGGCGCCCG AGGGGCTCTA CGGGGAGTTC
GCCGCCCGCT TCCCGTTCGA GGAGACCGAG GATCAGGCCA ACGCCATCGA CGCGGTGCTG
GACGACCTCA ATGCCGGCCG CCCGATGGAC CGACTGGTCT GCGGCGATGT CGGCTTCGGC
AAGACCGAGG TGGCGCTGCG CGCCGCCTTC GCGGCGGCGA TCTCCGGCAA GCAGGTGGCG
GTGATCGTCC CGACCACCCT GCTCGCCCGC CAGCACTACC GGACCTTCGC CGAGCGCTTC
AAGGGCCTGC CGGTCCAGGT GGCGCAGCTC TCGCGCTTCG CCTCCGCGGC GGAGATGAAG
CAGACCCGGG CGGGGCTCGC CGCCGGCACG GTCGACATCG TGGTCGGCAC GCACGCGCTC
TTGGCGAAGA ACATCGCCTT CAAGGATCTC GGCCTGATCA TCGTGGACGA GGAGCAGCAT
TTCGGCGTGG CCCACAAGGA GCGGCTGAAG GCGCTCCAGG CCGACGTCCA CGTGCTGACC
CTCTCGGCGA CCCCGATCCC GCGCACGCTC CAGCTCGCCA TGACGGGGGT GCGGGAACTG
TCGATCATCG CGACACCCCC GGTCGACCGG CTGGTGGTGC GCACCTTCGT GACGCCGTTC
GACCCCCTGA CCATCCGGGA GGCGCTGCTG CGCGAGCGCT ACCGCGGCGG CCAGTCCTTC
TACGTCGTGC CCAGGATCGA GGATCTGGCG GAAGTCAAGA AGTTCCTCGA CGCCGAGATG
CCCGAGATCA AGGTCGCGGT CGCCCACGGC CAGATGGCGG CGGGCCAGCT CGAGGACGTG
ATGACGGCCT TCTACGAGGG CAAGTTCGAC GTGCTGCTCT CGACCACGAT TGTAGAATCG
GGCCTCGACA TCCCCACCGC CAACACGCTG ATCGTCCACC GGGCCGACAT GTTCGGGCTG
GCCCAGCTCT ACCAGCTGCG CGGCCGCGTC GGGCGCTCGA AGGCGCGCGC CTACGCGCTG
TTCACGACGC CGGCGAACCG CCAGCTCACC GCCCAGGCCG AGCAGCGCCT CAAGGTGCTC
CAGAGCCTCG ACACGCTGGG CGCGGGCTTC CAGCTCGCCT CCCACGACCT CGACATCCGC
GGCGCCGGCA ACCTGCTCGG CGACGCGCAG TCCGGCCACA TCAAGGAGGT CGGCTACGAG
CTCTACCAGC AGATGCTGGA GGACGCGGTG ACGGCGCTGA AGGCCGGCAT CGAGGACGTG
CCCGAGGAGG CGTGGTCGCC GACCATCGCG CTCGGCGCAC CGGTCACGAT CCCGGAGGAT
TACGTCGAGG ATCTCGGGGT GCGGCTCGCC CTCTACCGGC GGCTCGCCAC CATCCAGGAC
GACGCCGAGA TGGAGAGCTT CGGCGCCGAG CTGATCGACC GGTTCGGGCC GCTGCCGCCG
GAGGTGGAGC AGCTCCTCAA GATCGGCACG ATCAAGATCC TCTGCCTCAA GGCGAACGTC
GAGAAGGTCG AGGCGGGGCC GAAGGGCGTG GTGGTCCATT TCCGCGACCG CTCCTACGCC
AACCCGCAGG GGCTGGTGGC CTACGTGGCC GAGCAGGCCT CGTTCGCGAA GGTGCGGCCC
GACATGAGCG TCGTGTTCGT GCGCGAGCTG ACCACCGTCC CGGCGCGGCT CAAGACCGCC
ACCGAGGTGC TGCGCAGCCT CGTGACGATC GCCGGGCGGG GGAAGAAGGC GGCGTGA
|
|---|
| Protein sequence | MAKPQPKPPA PAAKPPVARF ALPKSSALAR AIDALKRGDS PVLANAPEGF DALALADLAR
ALAPTVDAPA VLVHVARDSG RSAAFQAALG FVAPEMDVMS LPAWDCQPYD RVSPTTAVAA
ARMTALARLA RTRSAEDRPR ILCTTVNALV QRVPPRAHIA KEAFSAAIGN VVAMDDVVAW
VEANGFLRTG TVRDTGEYAV RGGILDLSPP GLPAPIRLDF FGDTLESIRA FDPETQRTTG
QLRSLDLMPM SEVQLTTETI RRFRQNYIQS FGAATRDDRL YETVSEGRRY AGLEHWMPLF
YDHLDTLFDY LGGVPLVFDP QVEDAAAERI SLVQDYYQAR EGAMKTPQPG VAPYKPLPPR
ALYLTPNELK ERIATATVAR LTPFAQPESP ERAVIDCGAK AGRSFAPERA DETASVFDAA
VAHIRDLQGS GHHVILGAWS DGSRDRLCGV LTDHGLRKPV AITRLTDVYA LKRGTDAAVA
VWGLEAGFTA GELAVVSEGD ILGDRLVRQK RKAKRPQDVI LEVQALQPGD LVVHADHGIG
RFVGLKTIHA AGAPHDCLEL QYTGGLLLLP VENIELLTRY GSEDSEVALD RLGGGAWQAR
KAKMKRRILE MAGELIKVAA QRFVRKAPAL QAPEGLYGEF AARFPFEETE DQANAIDAVL
DDLNAGRPMD RLVCGDVGFG KTEVALRAAF AAAISGKQVA VIVPTTLLAR QHYRTFAERF
KGLPVQVAQL SRFASAAEMK QTRAGLAAGT VDIVVGTHAL LAKNIAFKDL GLIIVDEEQH
FGVAHKERLK ALQADVHVLT LSATPIPRTL QLAMTGVREL SIIATPPVDR LVVRTFVTPF
DPLTIREALL RERYRGGQSF YVVPRIEDLA EVKKFLDAEM PEIKVAVAHG QMAAGQLEDV
MTAFYEGKFD VLLSTTIVES GLDIPTANTL IVHRADMFGL AQLYQLRGRV GRSKARAYAL
FTTPANRQLT AQAEQRLKVL QSLDTLGAGF QLASHDLDIR GAGNLLGDAQ SGHIKEVGYE
LYQQMLEDAV TALKAGIEDV PEEAWSPTIA LGAPVTIPED YVEDLGVRLA LYRRLATIQD
DAEMESFGAE LIDRFGPLPP EVEQLLKIGT IKILCLKANV EKVEAGPKGV VVHFRDRSYA
NPQGLVAYVA EQASFAKVRP DMSVVFVREL TTVPARLKTA TEVLRSLVTI AGRGKKAA
|
|---|
| |