| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrad2831_0857 |
|---|
| Symbol | |
|---|
| ID | 6136873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium radiotolerans JCM 2831 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010505 |
|---|
| Strand | - |
|---|
| Start bp | 896684 |
|---|
| End bp | 898099 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641626566 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001753550 |
|---|
| Protein GI | 170747290 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000295039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAC GACCTCCCAG AAGCGGCGGG CCGAAGGGGC GCAAGCCCCA GGCCGGCAAG
TTCGATGCGG GCAAGTTCAG GGGCGGCAAG GCCCAGGCCG ACGGCCGCGC CCGCACGGGC
CCGCGCACCA GCGCCCGCGA CGCCGCCGAG CGCGCGGCCC GCAACCGCGG CGAGGATGCC
GGCACCCGCG ATCCCTGGGG ATCGCAGGGC GCTGCGGTCT CCGCGCCGGC CCGGCCCCCG
AAGCCGCGCC GCGACGCCGC CGCACCGCGC GACGACGCAC CGCGGGACGC CGCCGCGGCC
AAGCCCGGCA GCCGGCCTCC GGCCAGGCGC TCGGCGGCCC CCTCCCCCGC CCTTGCCGCC
GCCCCCGCGC CCGGTCCGAC CCGGCGCGAG CAGCGCGCCG CCGCCTCCGC GACCCTCGCC
TCCGGCGTGC AGACCCTGAC GGTCGAGCCG GACGAGGCCG GGATGCGGAT CGACCGCTTC
CTCACCGCCC GCTTCCCGCT CCTGCCCTTC ACCCGCGTGC AGACCATCGT GCGCAAGGGC
GAATTGCGGG TCGACGGCAA GCGCGCCAAG CCGAACGACC GGCTGGAGCC GGGCATGAGC
GTGCGCGTGC CGCCGCTGCG CCTGGACCAG CCTACCGAGC GGCCGCGCAG CGCCGCCCGC
GAGCAGGACG ACGCGGCGTT CATCCGGTCG CTGATCCTCT ACGAGGACGC CGACATGATG
ATCCTCAACA AGCCCTTCGG CCTCGCGGTC CAGGGCGGTT CGGGGACGGT CCGCCACGTG
GACGGCCTGC TCGCCGCCCT CACGGGTCCG GACGGCCAGA AGCCGCGCCT CGTCCACCGG
CTGGACAAGG ATACGGCCGG CTGCCTGATC ATCGCCAAGA CCCGACTCGC CGCCGCGACG
CTGGCCAAGA GCTTCCGGTC CCGGGCGGCG CGGAAGATCT ACTGGGCGCT CACCGCGGGC
GTTCCCCGGG TGCGGCAGGG GCGCGTCTCG ACCTACCTCG CCAAGGAGGA ACCCACGGAC
GCCGACGCGC GGATGCGGGT CGCCAAGCAC GGCGACGAGG GTGCGAGCCA CGCGCTGACC
TACTACGCGA TGGTCGATCA GGCCGCCCAG AAGCTGTCCT GGCTGTCGTT CAAGCCGGTC
ACCGGCCGCA CGCACCAGCT GCGCGCCCAC GCGGCCCATA TCGGCCACCC GATCGTGGGC
GACCCGAAAT ACTTCTCGGT GGAGAACTGG GAGCTGCCGG GCGGAATCCA GAACCGCCTC
CACCTGCTCG CCCGGCGGAT CGTCATCCCG CATCCGCGCA CCGGCAAGCC GGTGGACGTG
AGCGCGCCGC TCCCGCCCCA CATGGCCCAG AGCTGGAACC TCCTGGGCTT CGACGCCGCC
CGCTACGACC CGATCGTCGA AGCCCCGGAG GCCTGA
|
|---|
| Protein sequence | MTTRPPRSGG PKGRKPQAGK FDAGKFRGGK AQADGRARTG PRTSARDAAE RAARNRGEDA
GTRDPWGSQG AAVSAPARPP KPRRDAAAPR DDAPRDAAAA KPGSRPPARR SAAPSPALAA
APAPGPTRRE QRAAASATLA SGVQTLTVEP DEAGMRIDRF LTARFPLLPF TRVQTIVRKG
ELRVDGKRAK PNDRLEPGMS VRVPPLRLDQ PTERPRSAAR EQDDAAFIRS LILYEDADMM
ILNKPFGLAV QGGSGTVRHV DGLLAALTGP DGQKPRLVHR LDKDTAGCLI IAKTRLAAAT
LAKSFRSRAA RKIYWALTAG VPRVRQGRVS TYLAKEEPTD ADARMRVAKH GDEGASHALT
YYAMVDQAAQ KLSWLSFKPV TGRTHQLRAH AAHIGHPIVG DPKYFSVENW ELPGGIQNRL
HLLARRIVIP HPRTGKPVDV SAPLPPHMAQ SWNLLGFDAA RYDPIVEAPE A
|
|---|
| |