| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_5212 |
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| Symbol | trmE |
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| ID | 6114214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5770200 |
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| End bp | 5771570 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641625035 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001752056 |
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| Protein GI | 170724368 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACTG TGCGTGAAAC CATCGCTGCC ATCGCAACCG CACAAGGACG CGGAGGAGTA
GGCATTGTCA GGCTATCCGG CCCGCTGGCG GCCAAGGCTG GCCAGCTCAT CACTGGGCGC
ACACTGACGC CGCGCCATGC CCATTACGGC CCATTCCGCG ACCAGGAAGG GCTGGTACTG
GATGAAGGTA TTGCGCTGTT CTTCCCCGGA CCCAACTCTT TCACCGGTGA GGACGTGCTC
GAGTTGCAGG GGCACGGAGG CCCGGTCGTA CTGGACATGC TGTTGCAACG CTGCGTGCAG
GTGGGTTGCC GTCTGGCCCG CCCGGGTGAG TTCAGTGAGC GGGCGTTCCT CAACGACAAG
CTCGACCTGG CCCAGGCCGA AGCGATTGCC GACCTGATCG AAGCCAGCTC CAGCCAGGCA
GCACGCAATG CCCTGCGCTC GTTGCAAGGG GAGTTCTCCA AGCGTGTGCA CAGCCTGACT
GAAGCTCTGA TCGCGCTGCG GATCTATGTC GAGGCAGCGA TCGACTTCCC GGAGGAGGAA
ATCGACTTTC TTGCCGATGG CCATGTCCTG TCGATGCTCG ACTCAGTGCG TGCCGAGTTG
TCCACAGTGC AGCGTGAGGC CGGGCAGGGT GCGCTGCTTC GTGATGGCAT GACGGTAGTG
ATCGCCGGCA GGCCTAATGC AGGTAAATCG AGCCTGTTGA ATCAATTGGC CGGCCGTGAG
GCGGCAATCG TCACCGCCAT TGCGGGTACG ACGCGGGATA TCCTGCGTGA ACATATCCAC
ATCGATGGCA TGCCGCTGCA CGTCGTCGAT ACGGCCGGGT TGCGCGACAC CGACGACCAT
GTGGAAAAGA TAGGCGTCGA GCGCGCCCTG AAGGCCATAG GCGAAGCCGA CAGAGTGTTG
TTGGTGGTCG ACTCCACCGC CCCTGAGGCC AGTGATCCGT TCGCCCTGTG GCCGGAGTTT
CTTGATCAAA GGCCTGATCC GGGCAAGGTC ACACTGATTC GCAACAAAGC CGACCTCAGC
GGCGAACCCG TAGGGCTGGA ACAGTGCGAT GACGGTCATG TAACCATCAC CTTGAGCGCC
AAAGGTGACG ATCAGGGCCT GCTGCTGTTA CGCGATCACC TCAAAGCCTG CATGGGTTAT
GAACAGACTG CAGAGAGTGG CTTCAGCGCA CGCCGGCGGC ACCTTGATGC CCTGCGCCAG
GCCTGTGCGC ATCTGGAGCA CGGTCGTGCG CAGTTGACCT TGGCGGGGGC TGGAGAGCTT
TTGGCTGAGG ACCTGCGCCA GGCTCAGCAC GCGCTGGGGG AGATCACGGG CGCGTTCAGT
TCGGATGACC TGCTGGGGCG AATCTTCTCG AGTTTCTGCA TCGGTAAGTA G
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| Protein sequence | MNTVRETIAA IATAQGRGGV GIVRLSGPLA AKAGQLITGR TLTPRHAHYG PFRDQEGLVL
DEGIALFFPG PNSFTGEDVL ELQGHGGPVV LDMLLQRCVQ VGCRLARPGE FSERAFLNDK
LDLAQAEAIA DLIEASSSQA ARNALRSLQG EFSKRVHSLT EALIALRIYV EAAIDFPEEE
IDFLADGHVL SMLDSVRAEL STVQREAGQG ALLRDGMTVV IAGRPNAGKS SLLNQLAGRE
AAIVTAIAGT TRDILREHIH IDGMPLHVVD TAGLRDTDDH VEKIGVERAL KAIGEADRVL
LVVDSTAPEA SDPFALWPEF LDQRPDPGKV TLIRNKADLS GEPVGLEQCD DGHVTITLSA
KGDDQGLLLL RDHLKACMGY EQTAESGFSA RRRHLDALRQ ACAHLEHGRA QLTLAGAGEL
LAEDLRQAQH ALGEITGAFS SDDLLGRIFS SFCIGK
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