| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_5105 |
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| Symbol | |
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| ID | 6114107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5662893 |
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| End bp | 5665640 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641624929 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001751950 |
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| Protein GI | 170724262 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.186109 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG CGCCCCTCGT CCTGGTGGAC GGTTCCTCTT ACCTTTACCG CGCCTTCCAC
GCGCTGCCGC CGCTGACCAC TTCCAAGGGC ATGCCCACCG GCGCGGTCAA GGGTGTGTTG
AACATGCTCA AGAGCCTGCG CAAGCAATAC CCCGACAGCC TGTTCGCCGT GGTGTTCGAT
GCCAAGGGCG GTACCTTCCG CGATGCCATG TTCGCCGAGT ACAAGGCCAA CCGCCCCAGC
ATGCCGGACG ACCTGCGGGT GCAGGTAGAG CCGCTGCATG CCAGCGTCAA GGCTCTGGGT
TACCCGCTGC TGTGCGTCGA GGGGGTCGAG GCCGACGACG TGATCGGCAC GCTGGCGCGC
AGCAGTGCGG CAAAGGGGCG GCCAGTGATC ATCTCGACCG GTGACAAGGA TATGGCGCAG
CTGGTAGACG GCCACGTTAC CCTGGTCAAC ACCATGACTG GCAGTGTGCT GGATGTGGCA
GGCGTGCATG AGAAGTTCGG CGTCGGCCCG GAGCACATCA TCGATTTCCT CGCCCTGATG
GGCGACAAGG TCGACAACAT CCCAGGCGTA CCTGGGGTCG GTGAAAAAAC CGCAGTAGGG
CTGCTGACCG GTATCGGCGG CGGCCTCAGC GACCTGTACG CCAACCTGGA CAAGGTGCCG
GCACTGGCGA TTCGTGGCGC CAAGACCCTG CCGGCCAAGC TCGAAGAACA CCGTGACGCG
GCGTTTTTGT CCTACGAACT GGCGACCATC AAAGTCGATG TGCCGCTGGA TATCGAAGTG
GACGCACTGG TGTGCGGCGA GCCGGACCGT GAAGCGCTGC TGGCACTTTA CACCGAGATG
GAATTCAAGA GCTGGATCGC CGACGTTCAG CGGGACGCAG CCAGGGCTGG CGATGAAGTT
GCGCCACTGG AGGCGCCTGC GGCCAAGGTC GAGCCCAAAT ACGAAACCAT CCTTGATCAG
GCTCGCTTCG ATGCCTGGCT GGAAAAGCTG CGTCAGGCAC CGCTGTTCGC TTTCGATACC
GAGACCACCA GCCTCGATGC GCAAAAGGCA CAGCTGGTCG GCCTGTCCTT CGCTGTCGAA
CCCCATGAAG CGGCTTACGT ACCGTTGGCA CACGACTATG AAGGCGCGCC GGTGCAACTG
GATCGCGAAG CCGTGTTGCT GGCATTGAAA CCGCTTCTGC AAGACCCGGC CAAGGAAAAG
GTTGGGCAGA ACGCCAAGTA CGATATCAAC ATCCTTGCCA ATGGCTCGCC GGCGATCCAG
ATGCAGGGCG TTGCCTATGA CACCATGCTT GAATCGTATG TGCTCAACTC CACTGCGACC
CGTCATGATA TGGACAGCCT GGCGCAGAAG TATCTCGACC ACGCCACCAT CGCTTTCGAA
GACATCGCCG GCAAAGGCGC CAAACAGCTG ACCTTCAACC AGATCCACCT GGATAAGGCT
GGCCCTTACG CTGCCGAAGA TGCCGACATT ACCCTGCGCC TGCATCAGGC GCTGCAGGCC
CGCCTTGCGC AGACACCGAG CGTGCTGCCG GTGCTGATGG ATATCGAGAT GCCGCTTGTG
CCGGTGCTGG CCAAGATCGA GCGCCAGGGC GCGCTGGTTG ATGCTGCTTT GTTACAGATA
CAGAGCGGTG AGCTGGGCGT GAAAATGGCC GATCTCGAGC GTCGGGCTTA TGAGCTGGCG
GGTGAGGAAT TCAACCTCGG CTCGCCCAAA CAGCTCGGCT CGATCCTCTA CGACAAGCTC
GGCATGCCGG TGCTGAGCAA GACCGCCAAG GGCCAGCCAT CCACGGCCGA AGCAGTACTG
GACGAGTTGG CCGAGCAAGG TTATCCGTTG CCGGAGGTAC TGATGCAGTA CCGCAGCCTG
AGCAAGCTCA AGAGCACGTA CACCGACAAG TTGCCGGGGC AGATCAACCC GCGAACCGGG
CGTATCCACA CGTCTTACCA GCAGGCCGTG GCCGCCACTG GGCGCCTGTC GTCCAGCGAC
CCGAACCTGC AGAATATTCC TATCCGTACC GCCGAAGGCC GGCGTATCCG CCAGGCGTTC
ATCGCCAGCC CGGGCTACAA GCTGCTGGCG GCGGACTATT CGCAGATCGA ACTGCGCATC
ATGGCCCACC TGGCCAAGGA CGAAGGCCTG CTGCACGCCT TCCGCAATAA CCTGGATGTG
CACCGTGCCA CGGCTGCGGA AGTTTTTGGC GTAGCTCTGG AAGCAGTCAC CACCGATCAG
CGTCGTAGCG CGAAAGCCAT CAACTTTGGC CTGATCTACG GTATGAGCGC ATTCGGCCTG
GCCAAGCAGA TCGGTGTAGA CCGCAAGCAG TCGCAGGATT ACATCGACCG CTATTTCGCC
CGTTACCCAG GCGTACTGGC CTACATGGAA CGCACCCGCG CCCAGGCTGC CGAGCAAGGC
TTCGTCGAGA CCTTGTTCGG CCGCAGGCTT TACCTGCCGG ACATCAACGC CAAGAATCCG
GCCCTACGCA AGGGCGCCGA GCGCACGGCG ATCAACGCAC CGATGCAGGG TACCGCCGCC
GACATCATCA AACGGGCAAT GGTTAACGTT GACAACTGGC TGAGCGAAAG CGGCCTCGAT
GCTCGCGTTA TCTTGCAGGT CCACGACGAA TTGGTGCTTG AAGTGCGCGA AGACCTCGTA
GACCAGGTGA AAGATGAAAT TCGCGGGCAG ATGAGCAAGG CCGCGCAACT GGATGTACCA
CTGCTGGTCG AGGTCGGCGT TGGTTCGAAT TGGGACGAAG CTCACTGA
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| Protein sequence | MSQAPLVLVD GSSYLYRAFH ALPPLTTSKG MPTGAVKGVL NMLKSLRKQY PDSLFAVVFD
AKGGTFRDAM FAEYKANRPS MPDDLRVQVE PLHASVKALG YPLLCVEGVE ADDVIGTLAR
SSAAKGRPVI ISTGDKDMAQ LVDGHVTLVN TMTGSVLDVA GVHEKFGVGP EHIIDFLALM
GDKVDNIPGV PGVGEKTAVG LLTGIGGGLS DLYANLDKVP ALAIRGAKTL PAKLEEHRDA
AFLSYELATI KVDVPLDIEV DALVCGEPDR EALLALYTEM EFKSWIADVQ RDAARAGDEV
APLEAPAAKV EPKYETILDQ ARFDAWLEKL RQAPLFAFDT ETTSLDAQKA QLVGLSFAVE
PHEAAYVPLA HDYEGAPVQL DREAVLLALK PLLQDPAKEK VGQNAKYDIN ILANGSPAIQ
MQGVAYDTML ESYVLNSTAT RHDMDSLAQK YLDHATIAFE DIAGKGAKQL TFNQIHLDKA
GPYAAEDADI TLRLHQALQA RLAQTPSVLP VLMDIEMPLV PVLAKIERQG ALVDAALLQI
QSGELGVKMA DLERRAYELA GEEFNLGSPK QLGSILYDKL GMPVLSKTAK GQPSTAEAVL
DELAEQGYPL PEVLMQYRSL SKLKSTYTDK LPGQINPRTG RIHTSYQQAV AATGRLSSSD
PNLQNIPIRT AEGRRIRQAF IASPGYKLLA ADYSQIELRI MAHLAKDEGL LHAFRNNLDV
HRATAAEVFG VALEAVTTDQ RRSAKAINFG LIYGMSAFGL AKQIGVDRKQ SQDYIDRYFA
RYPGVLAYME RTRAQAAEQG FVETLFGRRL YLPDINAKNP ALRKGAERTA INAPMQGTAA
DIIKRAMVNV DNWLSESGLD ARVILQVHDE LVLEVREDLV DQVKDEIRGQ MSKAAQLDVP
LLVEVGVGSN WDEAH
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