Gene PputW619_5099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_5099 
Symbol 
ID6114101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp5657017 
End bp5658978 
Gene Length1962 bp 
Protein Length653 aa 
Translation table11 
GC content62% 
IMG OID641624923 
Productdiguanylate cyclase 
Protein accessionYP_001751944 
Protein GI170724256 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.873917 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.160564 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAG AAGCCGAGCG CTGGAAAGAA AAATACCTTA AAAGCATCGA ACAGCAGGAA 
AAGCTGGAGC GGCGATGGGC AGCGCGGCTT GACCTGCTGC GTCGAGGCCT GGTGCGCAGT
ACCCTGGCCG CTGAAGGCAG CGACAAGGCG GTGGACCAAT GCATGAAGGA AATGCGTGAG
GTCATTCGCA GCGACAATAT GGATGCCGGG CTTGCCGGGT TGATCCCCCG TCTTGAAAAG
GCCGTGCTCG ACTCCGAGCA ACGCCGCGAA ACCCGCATGA ACCAGGTCAG CGATGCGCTG
ACCGCGCTCG TGACGCAGCT GCAAGGCCTG CCGTTGTCTG GTGATGTATC GCGATCGCTC
AAGAAACTGG CGAAGAAACT CGACGGCGGC GTCAGCCAGT CGCGCGAGTT GCCGCCGCTG
CTCGGAGAGC TGAGCGGGTT GCAGGGGCGG GCGCTGTCAT CGTTGAACAG GCCGGATGAG
GATGCCAGGC CGGGCTTTTT GCAGCGCTTG TTCGGCAACC GCGAGAGCGA ACCGCGGGGT
GACAACTCTT TAGAGCCGGC GGCCCCTTCT GCAATCGCTG CGCCTGAACT GCAGCCATTG
CCGGACGGTC CGGTGCTGGT GGATCTACCA CCCCGGGATA TCGACGAGCT GCAGCCGTTG
GTAGCACCTG AGGTTCATAA CCCAGTGCCT GTGGTGCCTG AAACGCCTGT TGCCGCACCG
CCCGTTCCAG GCGAGCCTGA GCCGCACGCA CAGGAGCCGG TCGAGGTTGC ACCCGTCTGT
GCTGAGCAAC CGCAGCGCAT CGAGGGCGCT CGAACCGAGC TGCCAATACA GGTCGATGAG
CCACAAGCGC TCAAGCCCCT GGAAGAAACC TTCGGCGAAG ACGGACCCTA TTCACTCCCT
GATGCAGTCG AGCCGCCTTA CAGTCAGGTT GCCGCGCATA TCGAGCAAAC CCTGATCGGC
CTGCTCGATG ACCTCAGCCT ACCCGAACGC CACAAAGCCC AGGCACTGGA AATGCGCGAG
CGCGTGGCAC GGGGGCTGAA CTGGTATGAG CTGATCCCGG TGCTCGATGA CCTGGCCGTG
CTCATGCTGG CGATCACCGA CAGCGGGCAG CACGAATTCG AGACTTACCT GCAGCAGCTC
AATGAGCGTC TCGAGAGCTT CCAGAGCCAC CTTCATGAAG CCAGTGCCGG TCATGCCGAC
AACAGTTCTG CTGCACGCGA GCTTGACAGC CAGCTGCGTG AACAGGTCGA TGGCCTGCAA
AGCAGCGTGC AAGGGGCGGT CGATGTGGAC AGCCTCAAGC ACATTCTCGA GAACCGCCTG
GAAGGGCTGC TGGTCACAAT GGATGAGCAT CAGCATGAGC GTGACCGCCG CGAACAGGAG
CTGGCCGGGC GCCTTCAGGG CTTAGCCGAG CGCGTCGCGA ACATGGAGCA GGAGGCCCTC
GGCTACCGCG AACACCTTGA GGAAACGCGG CAGAAGGCAT TGATCGACCC GCTGACCGGG
CTGCCCAATC GCGCGGCCTG GAGCGAGCAG GTAGAGCGCG AAATGCAGGC CTGGCAGGAG
AACGGCGGCC ACTTGGCGAT GGCGATTCTC GACCTGGACC ATTTCAAGCG CATCAATGAC
AGCTATGGCC ATCTGGCGGG CGACAAGGTA CTGAAGATCG TCGCTGACCA GTTGCGCAAG
CGCTTGCGGC CGCGCGATTT CATCGCCCGT TTCGGTGGCG AGGAGTTCGT ACTGTTGCTG
GCGCAGACGT CACCCACCGT AGCTGCGCAA GTGGCCGAGG TGCTGCGTGC CGCGATCGAA
GCGTGTCCGT TCCATTTCAA GGGCGAACGG GTGGTTATCA CCGCCTCCAT CGGTTTGAGC
GCATTCCGCT CGGGTGAGCG CGATGATCAG GTGCTAAAGC GTGCTGATGC GGCGCTGTAC
CGGGCCAAGG ACCTGGGCCG TAATCGGGTG GAACAAAGCT GA
 
Protein sequence
MTEEAERWKE KYLKSIEQQE KLERRWAARL DLLRRGLVRS TLAAEGSDKA VDQCMKEMRE 
VIRSDNMDAG LAGLIPRLEK AVLDSEQRRE TRMNQVSDAL TALVTQLQGL PLSGDVSRSL
KKLAKKLDGG VSQSRELPPL LGELSGLQGR ALSSLNRPDE DARPGFLQRL FGNRESEPRG
DNSLEPAAPS AIAAPELQPL PDGPVLVDLP PRDIDELQPL VAPEVHNPVP VVPETPVAAP
PVPGEPEPHA QEPVEVAPVC AEQPQRIEGA RTELPIQVDE PQALKPLEET FGEDGPYSLP
DAVEPPYSQV AAHIEQTLIG LLDDLSLPER HKAQALEMRE RVARGLNWYE LIPVLDDLAV
LMLAITDSGQ HEFETYLQQL NERLESFQSH LHEASAGHAD NSSAARELDS QLREQVDGLQ
SSVQGAVDVD SLKHILENRL EGLLVTMDEH QHERDRREQE LAGRLQGLAE RVANMEQEAL
GYREHLEETR QKALIDPLTG LPNRAAWSEQ VEREMQAWQE NGGHLAMAIL DLDHFKRIND
SYGHLAGDKV LKIVADQLRK RLRPRDFIAR FGGEEFVLLL AQTSPTVAAQ VAEVLRAAIE
ACPFHFKGER VVITASIGLS AFRSGERDDQ VLKRADAALY RAKDLGRNRV EQS