| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_5064 |
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| Symbol | |
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| ID | 6114057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5607311 |
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| End bp | 5609257 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641624879 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001751909 |
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| Protein GI | 170724221 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.303176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.479686 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTGT TCAAACAATT GCTGTTGGCC ATTTGCCTGT TCCTGGTAGT CGCGTTCAGC
GGCAGCTTCA TGGTCAGCCT GGAGAGTTCA CGCAGTCAGT ACGTAAACCA GCTGCGCTCA
CATGCTCAGG ACGCTGCCAC GGCGCTGGCG CTTTCTTTGA CGCCGAACAT CGATGACCCG
GCCATGGTAG AGCTCATGGT CAGTTCGATA TTTGACAGTG GCTATTATTC GAGCATCAAG
GTCGTCGACC TGGCCTCGAA TGCGGTGCTG GTGGAGCGTC ACGCGGAGCC AGATCCTGGT
GGTGTTCCTG CCTGGTTCAT CCACCTGATA GGCCTCGAAG CTGCCGGCGG TGATGCCATC
GTCAGCCGAG GTTGGCAACA AGCTGCGCGT GTCGAAGTCA TTAGCCACCC GATGTTCGCC
ATCTCCAAAC TCTGGCAGAG CGCCTTGGGC AGCCTGGGCT GGCTGCTGCT CTGCGGTGCA
GCGAGCGCGG TACTCGGAGC CTTACTGTTA CGTCGTCAAT TGCGGCCGCT GGACTACATG
GTCGAGCAGT CCCACGCCAT CGCCCGCCGC GAGTTCCTCA GCCTGCCTGA GCTGCCGCGC
ACGCCCGAGT TGCGCCGTGT GGTGCAAGCC ATGAACCAGA TGGTGGAGAA GCTCAAGGCC
CTGTTCAACG AGCAGGCCGA GCGCAGCGAG CGGCTACGTA CCGAATCGTA TCAGGACAGC
CTGACCGGGT TGTCCAATCG CCGTTACTTT GAAATGCAGC TCAATACCCG AGTCAGCAAC
CTTGAAGAAG CGAGGGCGGG TTACCTACTG TTGCTGCGTG TTCAGGACCT CACAGGGCTT
AACGCCCGCT TGGGCGGCCA ACGCACCGAC CAGCTGTTGC AGGCGGTCGG CGTACAGCTG
CAGCGTACCT GTGCCAAGTT CCCGGAGACC AAAGACCTGA TTTCCCGCAG CCGTGGCGGT
GAGTTCGCTG TGCTCGCCCC AGGCATGGTG CACGAAGAGG CGGTACAGCT CGCCCAGGCC
TTGGAGGCTA CACTGCAGAG CCTGCACGAG ACCGGTGCCA CCGATGTCGA CCCGGTAGCC
TGTATTGGCC TTGCACCGTT CAGCCCCGGC GACGCGCCGC AAGCGCTATT GAAACTTGCC
GATGAGGCCC TGGCCCGCGC TGAAAATCAG CCGACACCCG GCTGGGTTTG TCTTGAGCAG
GGGGCCGCGG CTGTTGCCGG CGATAGCCAT CACGCCTGGC ACACGCGGCT TGAGCAAGCC
TTCGTCAAAG GTCAGTTCGA ACTTTTCTTC CAACCGGTTG TGGAATGCAA AGACGTGCAG
CGCGTGCTGC ACTACAAAGT CATTTCACGG CTGCACGATG ATGAAGGCGA GGCAGTGCCG
GCTGGCCGCT TTCTGCCGTG GCTGGAGCGC TTTGGCTGGA TGACGCGGCT GGATGTGCTG
GTGCTCGAAA AAGTGCTGGC GCACTTGCGT AGCCATGATC AGGTGCTTGC GCTCAACCTG
TCGGCTGCGA CCCTGGCCGA CCCCAACGCT CTGCAGCGGG TATACGATTT GCTTGGCCAA
TACACCGCAC TGGGGCCACG CTTGGTCTTG GAAATCGGCG AAGAGCAATT GCCTGCGCAA
GCCGTGCTCG AGCAGTTGAC TCGACGCTTG CACGGGCTTG GTTTCGGGCT GGCGCTGCAG
CGTTTTGGTG GCCGCTTCAG CATGATCGGT AACCTGGCGC ACTTGGGCCT GGCGTACCTG
AAGATCGACG GGAGCTACAT CCGCAATATT GACCATGAGC AACACAAGCG TTTGTTCATC
GAAGCAATTC AGCGGGCAGC GCACAGTATT GATCTGCCGT TGATTGCCGA GCGGGTCGAA
ACGGAAGGAG AGCGACAGGT GCTACTGGAA ATGGAGGTGA AAGGTATTCA GGGGCAGTTG
GTGGGCGAGC CTGCCCCGTG GCGCTGA
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| Protein sequence | MSLFKQLLLA ICLFLVVAFS GSFMVSLESS RSQYVNQLRS HAQDAATALA LSLTPNIDDP
AMVELMVSSI FDSGYYSSIK VVDLASNAVL VERHAEPDPG GVPAWFIHLI GLEAAGGDAI
VSRGWQQAAR VEVISHPMFA ISKLWQSALG SLGWLLLCGA ASAVLGALLL RRQLRPLDYM
VEQSHAIARR EFLSLPELPR TPELRRVVQA MNQMVEKLKA LFNEQAERSE RLRTESYQDS
LTGLSNRRYF EMQLNTRVSN LEEARAGYLL LLRVQDLTGL NARLGGQRTD QLLQAVGVQL
QRTCAKFPET KDLISRSRGG EFAVLAPGMV HEEAVQLAQA LEATLQSLHE TGATDVDPVA
CIGLAPFSPG DAPQALLKLA DEALARAENQ PTPGWVCLEQ GAAAVAGDSH HAWHTRLEQA
FVKGQFELFF QPVVECKDVQ RVLHYKVISR LHDDEGEAVP AGRFLPWLER FGWMTRLDVL
VLEKVLAHLR SHDQVLALNL SAATLADPNA LQRVYDLLGQ YTALGPRLVL EIGEEQLPAQ
AVLEQLTRRL HGLGFGLALQ RFGGRFSMIG NLAHLGLAYL KIDGSYIRNI DHEQHKRLFI
EAIQRAAHSI DLPLIAERVE TEGERQVLLE MEVKGIQGQL VGEPAPWR
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