| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_5063 |
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| Symbol | |
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| ID | 6114056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 5605876 |
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| End bp | 5607252 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641624878 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001751908 |
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| Protein GI | 170724220 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.555972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGCATA AGCTGGATAT GGGGCGTTTC AAGGACAGCC TGCGCCGTTA CTTCAAGGGC
TCGGAATCCC TTGCCGGGCA ACCGCTGCCA GAGGTCAACA AAGCGCTGAT CGAAGACGCG
CCACGCATCG TGCGCCTGAC TATCTGGGGC ATCATCGCGT TCTTCCTGGT CATGATCATC
TGGGCCAGCG TGGCCCCCAT CGATGAAGTT ACCCGCGGTG AAGGCAAGGC CATTCCATCC
TCCAAAGTGC AGAAAATTCA GAACCTGGAA GGCGGCATCG TCGCGCAGAT CTATGCCAAG
GAAGGGCAGA TCGTCGAAGT CGGGGAGCCA TTGCTGCGGC TGGACGAAAC ACGCTTCGCA
TCCAACGTTG GTGAAACCGA AGCCGATCGT CTGGCGATGG CGCTGCGAGT GCAGCGCCTG
AGCGCCGAAG TAGACGACAA GCCGCTGCAG ATCGACGAAG AGCTGCGCAA GGCCGCACCG
AGCCAGGCCG CCAGCGAGCA GTCGCTGTAT CAGAGCCGGC GCCAACAACT GCATGATGAG
ATCAGCGGCT TGGAACAGCA ACTTGTGCAA AAACAGCAGG AACTGCGCGA GTTCACCTCC
AAGCGAGCAC AGTACGCCAA CAGCCTGCAG TTGCTGCGTC AGGAAATTGC CATGTCCGAG
CCACTGGTGG CCCAAGGCGC TATTTCCCAG GTGGAAGTGC TACGCCTGCG CCGCGCAGAA
GTAGAGAACC GCGGGCAGAT GGACTCCACC GCGCTCGCCA TTCCCCGCGC CGAAGCGGCT
ATCAAGGAAG TGCAGAGCAA GATTGAAGAA ACCCGCGGCA AGTTCCGCAG CGAGGCGCTG
ACCCAGCTCA ACGAGGCACG TACCGAGTTG AACAAGGCCA CCGCCACGGG CAAGGCGCTG
GATGACCGGG TCAACCGTAC GATGGTCAGC TCGCCGGTAC GTGGCATCGT CAAGCAGTTG
CTGGTCAACA CTGTCGGAGG CGTGATCCAG CCAGGCAGTG ATATCGTAGA GATCGTGCCA
CTGGATGATA GCCTTGTAGT GGAGGCCAAG ATCCTGCCCA AGGACATCGC GTTTCTGCAC
CCGGGCCAGG AAGCGACAGT CAAGTTCACT GCCTACGACT ACACCATATA CGGCGGTTTG
AAGGCCACGC TGGAGCAGAT CGGTGCCGAC ACCATCACCG ATGAAGACAA AAAGACCACG
TACTACCTGA TCAAGCTGCG CACGGAGAAA AGCCACTTGG GTACGGACGA GAAACCGTTG
CTGATCATCC CAGGAATGGT AGCAACGGTG GATATCATGA CGGGCAAGAA GACCATCATG
AGCTACCTGC TAAAACCCAT CATGAAGGCC CGTGCTGAAG CCCTGCGCGA ACGCTGA
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| Protein sequence | MLHKLDMGRF KDSLRRYFKG SESLAGQPLP EVNKALIEDA PRIVRLTIWG IIAFFLVMII
WASVAPIDEV TRGEGKAIPS SKVQKIQNLE GGIVAQIYAK EGQIVEVGEP LLRLDETRFA
SNVGETEADR LAMALRVQRL SAEVDDKPLQ IDEELRKAAP SQAASEQSLY QSRRQQLHDE
ISGLEQQLVQ KQQELREFTS KRAQYANSLQ LLRQEIAMSE PLVAQGAISQ VEVLRLRRAE
VENRGQMDST ALAIPRAEAA IKEVQSKIEE TRGKFRSEAL TQLNEARTEL NKATATGKAL
DDRVNRTMVS SPVRGIVKQL LVNTVGGVIQ PGSDIVEIVP LDDSLVVEAK ILPKDIAFLH
PGQEATVKFT AYDYTIYGGL KATLEQIGAD TITDEDKKTT YYLIKLRTEK SHLGTDEKPL
LIIPGMVATV DIMTGKKTIM SYLLKPIMKA RAEALRER
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