| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4999 |
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| Symbol | gabD |
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| ID | 6113991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5521119 |
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| End bp | 5522561 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641624813 |
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| Product | succinate-semialdehyde dehydrogenase I |
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| Protein accession | YP_001751844 |
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| Protein GI | 170724156 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.354077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTCA AAGACGCTCA GTTGTTCCGC CAGCAAGCCT TCATCAACGG TGAATGGCTG
GATGCGGACA GCGGCCAGAC CATCAATGTG ACCAACCCGG CCACAGGTGA AGTCATCGGT
ACCGTGCCGA AGATGGGTAC TGCGGAAACC CGCCGCGCCA TCGAAGCTGC CGACAAGGCC
CTGCCGGCCT GGCGTGCACT GACCGCCAAA GAGCGCTCGA ACAAGCTGCG TCGCTGGTTC
GAACTGATGA TCGAGAACCA GGACGACCTG GCTCGCCTGA TGACCACCGA ACAAGGCAAG
CCACTGGCCG AAGCCAAGGG CGAAATCGCC TACGCAGCCT CGTTCATCGA GTGGTTCGCC
GAAGAAGCCA AGCGCGTCTA CGGTGATACC ATCCCGGGCC ACCAGCCTGA CAAGCGCCTG
ATCGTCATCA AGCAGCCGAT CGGCGTTACC GCGGCCATCA CGCCGTGGAA CTTCCCGGCG
GCGATGATCA CCCGTAAAGC CGGCCCGGCC CTGGCCGCTG GCTGCACCAT GGTGCTCAAG
CCTGCTTCGC AAACCCCGTA CTCTGCCCTG GCCCTGGTCG AGCTGGCTAC CCGTGCCGGC
ATCCCGGCTG GCGTGCTGAG CGTGGTGACC GGCAGCGCTG GCGAAGTTGG CGGCGAGCTG
ACCGGCAACT CCCTGGTGCG CAAACTGTCC TTCACCGGCT CGACCGAAAT CGGTCGCCAG
TTGATGGAAG AATGTGCCAA GGACATCAAG AAGGTTTCCC TGGAGCTGGG TGGCAACGCC
CCATTCATCG TGTTCGACGA TGCCGACCTG GATAAGGCGG TAGAAGGCGC GATCATCTCC
AAGTACCGCA ACAACGGCCA GACTTGCGTT TGCGCCAACC GTATCTATGT GCAGGACGGC
GTCTACGATG CCTTCGCCGA GAAGCTCAAA GCCGCTGTTG CCAAACTGAA GATCGGTAAC
GGCCTGGAAG ACGGCACCAC CACTGGCCCG CTGATCGACG GCAAGGCCGT CGCCAAGGTT
CAGGAACACA TCGAGGACGC CGTCTCCAAA GGTGCCAAGG TGCTGTCCGG TGGCAAGCTG
ATCGAAGGCA ACTTCTTCGA GCCGACCATC CTGGTCGACG TGCCGAAGAC GGCTGCCGTC
GCCAAGGAAG AGACCTTCGG CCCGCTGGCG CCGCTGTTCC GCTTCAAGGA CGAGGCTGAA
GTCATCGCCA TGTCCAACGA CACCGAGTTC GGCCTGGCCT CGTACTTCTA TGCCCGCGAC
ATGAGCCGTG TGTTCCGCGT TGCCGAGGCG CTGGAATACG GCATGGTGGG TATCAACACC
GGCCTGATCT CCAACGAAGT CGCGCCGTTC GGCGGCATCA AGGCTTCGGG CCTGGGCCGT
GAAGGCTCCA AGTACGGCAT CGAGGACTAC CTCGAAATCA AGTACCTGTG CATCAGCGTC
TGA
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| Protein sequence | MQLKDAQLFR QQAFINGEWL DADSGQTINV TNPATGEVIG TVPKMGTAET RRAIEAADKA
LPAWRALTAK ERSNKLRRWF ELMIENQDDL ARLMTTEQGK PLAEAKGEIA YAASFIEWFA
EEAKRVYGDT IPGHQPDKRL IVIKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVLK
PASQTPYSAL ALVELATRAG IPAGVLSVVT GSAGEVGGEL TGNSLVRKLS FTGSTEIGRQ
LMEECAKDIK KVSLELGGNA PFIVFDDADL DKAVEGAIIS KYRNNGQTCV CANRIYVQDG
VYDAFAEKLK AAVAKLKIGN GLEDGTTTGP LIDGKAVAKV QEHIEDAVSK GAKVLSGGKL
IEGNFFEPTI LVDVPKTAAV AKEETFGPLA PLFRFKDEAE VIAMSNDTEF GLASYFYARD
MSRVFRVAEA LEYGMVGINT GLISNEVAPF GGIKASGLGR EGSKYGIEDY LEIKYLCISV
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