Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4937 |
Symbol | |
ID | 6113929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 5452249 |
End bp | 5454717 |
Gene Length | 2469 bp |
Protein Length | 822 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641624751 |
Product | hypothetical protein |
Protein accession | YP_001751782 |
Protein GI | 170724094 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000992532 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000000106484 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGCGTAAGG TCTATCAGGA GCAACTGCAG AAAGCTGTTT CACTTTCCTC CCCAGGCGAA TCGTTGAGTT ATCTGTGCTC TATAATGCGT TCGCTCCTGC AATGCCTCTC GATCAGTGCA TTAGAAACGG TCATCCAAGC CACTCCCTCT GTGGATGAGG ACGTAGATCT GAAGCCGTTT CTGGACCGCT TCAGTCAGCC GTCTGACGGT TTGCCGGTAG AAATCCTAGA TGCACTGGTA CCTCGGATTC GCAGTCTGGT GTTTCGCAAC TACTTCAATG GGTGGTACGA AACCTTGCCA GAAAGCCAGA GTAGCTTGGT TGAGGAATTG CAGCAGTGGG TTGCTTTCCG CAACGGCCGA CCGGCGCACG GCGTCCTAGA CGCGCCTACT ACCGATCACT GGTCTACCAA AACAGCAGAT CTAATCCGAC GAATTTTAGC CCGCGCAGAT GGCGTGCTAC CCACTGCGAA GCAATCGGGA TTGGCTGTTC AGATTGGTGA TCTGTTGGTG CCGATCAATA CACCATTGCT CGTGACCGGG CATGCTGTGG TAATCAAACG TATCGTTTCG CGTAAAGGTG TATTGAAGGC TCAAGGTCAT CTGCTGTCGT GGACTGATGC ACGCGAATTC ACCAGCGACT TACAGCAAAG CAGCGTTTTC TCTGCTGAAA GCCAAACTGT GGAAAAATTT AGATGGACAG AAATCCCCAC TCAAAATAGC TCGTTCTTAT TGCTTAATAA CATTCCAGGC AGGCAAACCT CAACGTTTGT TGGCCGAAGT AGAGAACTAG ATAAGCTTAA GGCGTGGATG GGCGACATAG TTGACTCCAG GGCCTGCTTG GTATTTGGTG ACGGTGGCTT TGGAAAAACG ACTCTTGTAC TTGAGTTCTT CAACAGCTTA CTAGAGGGCT CTCTCGAGGC AGACTTTCCG CTGCCTTCGA TCATCAGTTT TTACACAGCG AAACGAACCA AATGGACTGA ACAAGGCCTC ATACATTTCA AAGGTATTTC CGAGGCAATG GAGGACAGCG TAAGGGAGTT ACTGTATAGC CTTACTCCTA TTCTAGGCAA AGAGTGGTAC AAGCATGACG GTCGATCACT CATTGACAAA GCGGCCCAAG CGTTTGCCGA TGAAGGGTTT ACGCGTAATG ACGTACTATT GATCATCGAC AATACAGAGA CCTTGGCTAC ATCACAGGTT GATGCGCAAG AACTCGGTGA CTTTATTTAC ATGGTCGCCA AAAAGATTGG CCGAGTAGTC ATAACCTCTA GACGCCGGGA AATTCTCAAT GCGGAACCAC TTCCTGTCAG TCAACTTCCT GAGTCGGAAG CGTTCTTGCT ATTACAAAAA CTAGGATCTG AGTACGGCGC GCGTGCAGTT ACTCAAGCCG GTGAAGCTCG ACTGCGCAAC GTGTGCGCTC AACTAATGTG CAAGCCACTA TTGATCGACA CGCTGGTTCG CTACATTGCA CGATCGTCTT CTAGCATCCA AGATGGCCTT GATCAAATCC TAAAAAAAAC CAATGACGAG CTCTTGGAGT TCTTGTACGA AGATGCTTGG GCACGTATGA ATACTTCAGT GCAGAAAGTA TTCATGACAC TGGTCTCGTT AGCCAGCCCT CTAGACGGCA AATGTGTAGG GGATGTATGC ACTCAGTTAG GCGTATTGCA CGCCGAGTTC CAAGGAAGCC TCGGTGAAAC TTACTTCGCT ACCATCGTGG ACCGAGGCGA CAGCTACGAT CTAGAGATTG TGGAATTAGC TAAGGAATTC TTCCGTCAAA AGAAGAAGAA ATTACCAACT GACGTTTCGG AGCTCATCGA CAAGATTGCT CTGAAGGTAG ATAAACAGGC TACAGCTCGA TTTGAAATAG AAAAAAGTTA TCGCACTGAC CGAGTCGCTG ATGGTTTCAG GAATGAATAC GCAAAAGCCG CCAAAATTGC CATGATCAAA AAAGATCATC TCGCTGCCTG CGAGAATTTT GAGTTGGCGT TACTCGAAGA GCCGCTGAAT GCTGCCCTAC ATGAACGTTA TGCCTCGTTC CTATTTAGAT CTTTGGGTAA GCCGGACGTA GCCTACCCCT ATGCCGAACG AGCCACGACA TTGGACGAGC ACAGCGCAGA TGCATGGCTA ACACTTGGGC TGATAAAATA CAAACAAGGT GACCTTGAGG GCGGCGACCG GGCCATTGAG AAATCCTTAA AATTCGGAAA AACCGAACAA CTTTGCGCGT TGAGAAAAGG GATTGCTCGC TATCACGCTG CCAAACAAGA AGTTTACAGC GGGCGCACCG TCAGAATCTT GAAAGAGGCA GAACTGCTAG TAGTACAGTC AACTAAGAGC AGGCACACCA ATGACTTTTA TCATCACAAG AACAAACGTG AAGCCGAGAA ATACATTGTA CTTATTCGCA ATCTCTCGGA TACTGTAAAG AAGCGGATCT CTGCGATGCA AACTCAACCT GACCGCTAA
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Protein sequence | MRKVYQEQLQ KAVSLSSPGE SLSYLCSIMR SLLQCLSISA LETVIQATPS VDEDVDLKPF LDRFSQPSDG LPVEILDALV PRIRSLVFRN YFNGWYETLP ESQSSLVEEL QQWVAFRNGR PAHGVLDAPT TDHWSTKTAD LIRRILARAD GVLPTAKQSG LAVQIGDLLV PINTPLLVTG HAVVIKRIVS RKGVLKAQGH LLSWTDAREF TSDLQQSSVF SAESQTVEKF RWTEIPTQNS SFLLLNNIPG RQTSTFVGRS RELDKLKAWM GDIVDSRACL VFGDGGFGKT TLVLEFFNSL LEGSLEADFP LPSIISFYTA KRTKWTEQGL IHFKGISEAM EDSVRELLYS LTPILGKEWY KHDGRSLIDK AAQAFADEGF TRNDVLLIID NTETLATSQV DAQELGDFIY MVAKKIGRVV ITSRRREILN AEPLPVSQLP ESEAFLLLQK LGSEYGARAV TQAGEARLRN VCAQLMCKPL LIDTLVRYIA RSSSSIQDGL DQILKKTNDE LLEFLYEDAW ARMNTSVQKV FMTLVSLASP LDGKCVGDVC TQLGVLHAEF QGSLGETYFA TIVDRGDSYD LEIVELAKEF FRQKKKKLPT DVSELIDKIA LKVDKQATAR FEIEKSYRTD RVADGFRNEY AKAAKIAMIK KDHLAACENF ELALLEEPLN AALHERYASF LFRSLGKPDV AYPYAERATT LDEHSADAWL TLGLIKYKQG DLEGGDRAIE KSLKFGKTEQ LCALRKGIAR YHAAKQEVYS GRTVRILKEA ELLVVQSTKS RHTNDFYHHK NKREAEKYIV LIRNLSDTVK KRISAMQTQP DR
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