Gene PputW619_4937 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4937 
Symbol 
ID6113929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp5452249 
End bp5454717 
Gene Length2469 bp 
Protein Length822 aa 
Translation table11 
GC content48% 
IMG OID641624751 
Producthypothetical protein 
Protein accessionYP_001751782 
Protein GI170724094 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000992532 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000106484 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGCGTAAGG TCTATCAGGA GCAACTGCAG AAAGCTGTTT CACTTTCCTC CCCAGGCGAA 
TCGTTGAGTT ATCTGTGCTC TATAATGCGT TCGCTCCTGC AATGCCTCTC GATCAGTGCA
TTAGAAACGG TCATCCAAGC CACTCCCTCT GTGGATGAGG ACGTAGATCT GAAGCCGTTT
CTGGACCGCT TCAGTCAGCC GTCTGACGGT TTGCCGGTAG AAATCCTAGA TGCACTGGTA
CCTCGGATTC GCAGTCTGGT GTTTCGCAAC TACTTCAATG GGTGGTACGA AACCTTGCCA
GAAAGCCAGA GTAGCTTGGT TGAGGAATTG CAGCAGTGGG TTGCTTTCCG CAACGGCCGA
CCGGCGCACG GCGTCCTAGA CGCGCCTACT ACCGATCACT GGTCTACCAA AACAGCAGAT
CTAATCCGAC GAATTTTAGC CCGCGCAGAT GGCGTGCTAC CCACTGCGAA GCAATCGGGA
TTGGCTGTTC AGATTGGTGA TCTGTTGGTG CCGATCAATA CACCATTGCT CGTGACCGGG
CATGCTGTGG TAATCAAACG TATCGTTTCG CGTAAAGGTG TATTGAAGGC TCAAGGTCAT
CTGCTGTCGT GGACTGATGC ACGCGAATTC ACCAGCGACT TACAGCAAAG CAGCGTTTTC
TCTGCTGAAA GCCAAACTGT GGAAAAATTT AGATGGACAG AAATCCCCAC TCAAAATAGC
TCGTTCTTAT TGCTTAATAA CATTCCAGGC AGGCAAACCT CAACGTTTGT TGGCCGAAGT
AGAGAACTAG ATAAGCTTAA GGCGTGGATG GGCGACATAG TTGACTCCAG GGCCTGCTTG
GTATTTGGTG ACGGTGGCTT TGGAAAAACG ACTCTTGTAC TTGAGTTCTT CAACAGCTTA
CTAGAGGGCT CTCTCGAGGC AGACTTTCCG CTGCCTTCGA TCATCAGTTT TTACACAGCG
AAACGAACCA AATGGACTGA ACAAGGCCTC ATACATTTCA AAGGTATTTC CGAGGCAATG
GAGGACAGCG TAAGGGAGTT ACTGTATAGC CTTACTCCTA TTCTAGGCAA AGAGTGGTAC
AAGCATGACG GTCGATCACT CATTGACAAA GCGGCCCAAG CGTTTGCCGA TGAAGGGTTT
ACGCGTAATG ACGTACTATT GATCATCGAC AATACAGAGA CCTTGGCTAC ATCACAGGTT
GATGCGCAAG AACTCGGTGA CTTTATTTAC ATGGTCGCCA AAAAGATTGG CCGAGTAGTC
ATAACCTCTA GACGCCGGGA AATTCTCAAT GCGGAACCAC TTCCTGTCAG TCAACTTCCT
GAGTCGGAAG CGTTCTTGCT ATTACAAAAA CTAGGATCTG AGTACGGCGC GCGTGCAGTT
ACTCAAGCCG GTGAAGCTCG ACTGCGCAAC GTGTGCGCTC AACTAATGTG CAAGCCACTA
TTGATCGACA CGCTGGTTCG CTACATTGCA CGATCGTCTT CTAGCATCCA AGATGGCCTT
GATCAAATCC TAAAAAAAAC CAATGACGAG CTCTTGGAGT TCTTGTACGA AGATGCTTGG
GCACGTATGA ATACTTCAGT GCAGAAAGTA TTCATGACAC TGGTCTCGTT AGCCAGCCCT
CTAGACGGCA AATGTGTAGG GGATGTATGC ACTCAGTTAG GCGTATTGCA CGCCGAGTTC
CAAGGAAGCC TCGGTGAAAC TTACTTCGCT ACCATCGTGG ACCGAGGCGA CAGCTACGAT
CTAGAGATTG TGGAATTAGC TAAGGAATTC TTCCGTCAAA AGAAGAAGAA ATTACCAACT
GACGTTTCGG AGCTCATCGA CAAGATTGCT CTGAAGGTAG ATAAACAGGC TACAGCTCGA
TTTGAAATAG AAAAAAGTTA TCGCACTGAC CGAGTCGCTG ATGGTTTCAG GAATGAATAC
GCAAAAGCCG CCAAAATTGC CATGATCAAA AAAGATCATC TCGCTGCCTG CGAGAATTTT
GAGTTGGCGT TACTCGAAGA GCCGCTGAAT GCTGCCCTAC ATGAACGTTA TGCCTCGTTC
CTATTTAGAT CTTTGGGTAA GCCGGACGTA GCCTACCCCT ATGCCGAACG AGCCACGACA
TTGGACGAGC ACAGCGCAGA TGCATGGCTA ACACTTGGGC TGATAAAATA CAAACAAGGT
GACCTTGAGG GCGGCGACCG GGCCATTGAG AAATCCTTAA AATTCGGAAA AACCGAACAA
CTTTGCGCGT TGAGAAAAGG GATTGCTCGC TATCACGCTG CCAAACAAGA AGTTTACAGC
GGGCGCACCG TCAGAATCTT GAAAGAGGCA GAACTGCTAG TAGTACAGTC AACTAAGAGC
AGGCACACCA ATGACTTTTA TCATCACAAG AACAAACGTG AAGCCGAGAA ATACATTGTA
CTTATTCGCA ATCTCTCGGA TACTGTAAAG AAGCGGATCT CTGCGATGCA AACTCAACCT
GACCGCTAA
 
Protein sequence
MRKVYQEQLQ KAVSLSSPGE SLSYLCSIMR SLLQCLSISA LETVIQATPS VDEDVDLKPF 
LDRFSQPSDG LPVEILDALV PRIRSLVFRN YFNGWYETLP ESQSSLVEEL QQWVAFRNGR
PAHGVLDAPT TDHWSTKTAD LIRRILARAD GVLPTAKQSG LAVQIGDLLV PINTPLLVTG
HAVVIKRIVS RKGVLKAQGH LLSWTDAREF TSDLQQSSVF SAESQTVEKF RWTEIPTQNS
SFLLLNNIPG RQTSTFVGRS RELDKLKAWM GDIVDSRACL VFGDGGFGKT TLVLEFFNSL
LEGSLEADFP LPSIISFYTA KRTKWTEQGL IHFKGISEAM EDSVRELLYS LTPILGKEWY
KHDGRSLIDK AAQAFADEGF TRNDVLLIID NTETLATSQV DAQELGDFIY MVAKKIGRVV
ITSRRREILN AEPLPVSQLP ESEAFLLLQK LGSEYGARAV TQAGEARLRN VCAQLMCKPL
LIDTLVRYIA RSSSSIQDGL DQILKKTNDE LLEFLYEDAW ARMNTSVQKV FMTLVSLASP
LDGKCVGDVC TQLGVLHAEF QGSLGETYFA TIVDRGDSYD LEIVELAKEF FRQKKKKLPT
DVSELIDKIA LKVDKQATAR FEIEKSYRTD RVADGFRNEY AKAAKIAMIK KDHLAACENF
ELALLEEPLN AALHERYASF LFRSLGKPDV AYPYAERATT LDEHSADAWL TLGLIKYKQG
DLEGGDRAIE KSLKFGKTEQ LCALRKGIAR YHAAKQEVYS GRTVRILKEA ELLVVQSTKS
RHTNDFYHHK NKREAEKYIV LIRNLSDTVK KRISAMQTQP DR