| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4912 |
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| Symbol | |
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| ID | 6113902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 5426187 |
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| End bp | 5427134 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641624724 |
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| Product | choline ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001751757 |
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| Protein GI | 170724069 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00426686 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGGTT CACCCTCGCT GTTGCTGGCC GCGTTGCTGT CCGCCCCCTT GCTGGCCCAG
GCCGCAGAAC CCGAGCAGTG TCAGACGGTA CGTTTTTCTG ATGTCGGCTG GACCGACATC
ACGGTAACCA CCGCGACCAC CAGCGTTGTG CTCGAAGCAT TGGGTTACAA GACTCACACC
ACCATGATCT CGGTACCGGT GACCTACAAG TCGCTGGCCA CCGGCAAGGA CCTGGACGTG
TTTCTCGGCA ACTGGATGCC GACCATGGAG AACGACATCA AGCAGTACCG TGACGCCGGC
ACTGTCGAAA CCGTGCGCGC CAACCTGGAA AACGCCAAGT ACACCTTGGC CGTGCCCCAG
TCGCTGTACG ACAAGGGCCT CAAGGACTTT GCCGACATTC CCAAATTCAA GAAGGAGCTG
GACGGCAAGA TCTACGGCAT CGAACCCGGC AATGACGGCA ACCGCACCAT CCAGAGCATG
ATCGACAAGA ACGCCTTCGG CCTGAAGGAC GCCGGTTTCA AGATCGTGCA GTCCAGTGAA
GCCGGCATGC TGTCCCAGGT CGACAGGGCG CAGAAGCGCG GTGACGCGAT CGTGTTCCTC
GGCTGGGAGC CTCACCCGAT GAACACCCGC TTCAAGATGC AGTACCTGAC CGGCGGGGAC
GACTTTTTCG GCCCCGAATT GGGCAAGGCA ACCGTGCTGA CCAATACCCG CAAGGGCTAT
GTGCAGGAGT GCAGCAACGT AGGCCAACTG CTCAAGAACC TGTCGTTCGA GCTCAAGGAT
GAAAGCACCA TGATGGGCTA TGTCCTGGAC GACAAGATGA AACCCGAGGC AGCTGCCAAG
AAGTGGCTCA AGGACAACCC AGGCAAGCTG GACGCCTGGC TCGCCGGGGT GACCACCGTG
GACGGCAAAC CCGGCCTTGA GGCGGCCAAA GCCAAACTGA CGCAATAA
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| Protein sequence | MKGSPSLLLA ALLSAPLLAQ AAEPEQCQTV RFSDVGWTDI TVTTATTSVV LEALGYKTHT
TMISVPVTYK SLATGKDLDV FLGNWMPTME NDIKQYRDAG TVETVRANLE NAKYTLAVPQ
SLYDKGLKDF ADIPKFKKEL DGKIYGIEPG NDGNRTIQSM IDKNAFGLKD AGFKIVQSSE
AGMLSQVDRA QKRGDAIVFL GWEPHPMNTR FKMQYLTGGD DFFGPELGKA TVLTNTRKGY
VQECSNVGQL LKNLSFELKD ESTMMGYVLD DKMKPEAAAK KWLKDNPGKL DAWLAGVTTV
DGKPGLEAAK AKLTQ
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