| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4887 |
|---|
| Symbol | |
|---|
| ID | 6113877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5397322 |
|---|
| End bp | 5399259 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641624699 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001751732 |
|---|
| Protein GI | 170724044 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.658451 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATCT GGCGTCGAAG TATCCAGTGG CAGTTGATCG CGAGCATGGG CGCGGCCCTG
CTGGCGAGCA TCCTGGTGGT CGTGATCATT TTCACCGTGG CGCTCAACCG CCTCACCGAT
CGCTACCTGG TGGACACGGC GCTGCCGGCC AGCATCGAAG CCATCCGCAA CGACATCGAG
CGAATGCTTG GCCAGCCGCT GGTAGCCGCA GCCGACATCG CCGGCAACAC GCTGCTGCGT
GATTGGCTGG CCGCCGGTGA AGATGCTGGC GAAATGCCGC GCTTTATCGA ATACCTGCAG
GCCGCCAAGC AGCGCAACCA GGCCTTCACC ACACTCTTCG CCTCGACCGA GACCGGCCAC
TACTACAACG AGAATGGCTT GGACCGCACC CTCAGCCGTG ACAACCCCAA AGACAAGTGG
TTTTACGGCT ACATCGACAG TGGCGCCGAG CGCCTGATCA ATATCGATAT CGACGGCGCT
ACCGGCGAGC TGGCGCTGTT CATCGACTAC CGCGTGGAAA AGGACGGCAA GCTGGTCGGT
GTGGCCGGCA TGGGCCTGCG CATGACCGAG CTGTCGAAAC TTATCCACGA CTTCAGCTTT
GGCGAGCACG GCAAGGTGTT TCTGGTACGC AACGATGGCT TGATCCAGGT GCATCCGGAC
AATGCCTTCA GCGGCAAGCG ACAGCTCGCG CAGCAGCTCG ATGAACAGGC CGCCAAGGTG
GTGATGAGTG GTGAGCAGGG CTTGCGCACC AGCCGTTTCC AGCGTGAAGG CGAAGGCTAT
CTGGCCTTGG GCTTGCCCCT GCGCGACCTG AACTGGACCT TGGTTGCCGA GGTGCCTGAG
GCAGAGATCT ATGCGCAGAT GCGTCAGGCG GTTTGGCTCA CCACGGCGAT CGGTGGTGGT
GTGGCGCTGC TCTCGCTTTT GCTGGTGGTG CTGCTGGCGC GCGGGCTGGT GCGGCCTATT
CGCCGTGTGA CCGCCGCGCT GGTGCAGATT GGCAGCGGTG CGGGTGACCT CAGCCATCGC
CTGGACGATT CGCGTCAGGA CGAACTGGGC GATCTGGCCC GCGGCTTCAA CCGTTTTCTC
GACAGCCAGC GCGGGCTGAT CGGCGAGGTG CTGCGCACCA CCGAGCGCTT GCATCGGGCT
GTCGAACAGG TGACTCAGGT GGTGGACAAC ACGGCCGAAC GTTCCGGGCG GCAGCAGGAA
ATGACCGAAA TGGTTGCCAC CGCCGTGCAC GAAATGGGGC TGACCGTGCA GGACATTGCC
CGCAACGCCG GCGATGCTGC GCAGGCTTCG CAGTCAGCGC GGGACGAAGC CTTGCAGGCG
CGTGAAGTGG TGCGCCGTTC GATCCAGGGT ATCGAGGGCA TGTCGGGTGA CATCGGCAAG
GCTGCGGATG CGGTGGCGCA ATTGGCCGAC GAAGTCGCCT CTATCGATGA AGTATTGGCG
GTGATCCGCA GCATTTCCGA ACAGACCAAC CTGCTGGCGC TCAACGCTGC CATCGAGGCG
GCGCGAGCAG GGGAGATGGG GCGTGGCTTT GCCGTGGTGG CCGATGAGGT GCGGACGCTG
GCACGTCGTA CCCAGGTGTC GACGGATGAA GTCCAGCAGA TGATCCAGCG CCTCAAGCAC
GGGGCGGGTT CGGCGGTAAC GTCGATGCAC GCGGGGCAGC AGGCGACGGG CAGTGGCGTG
GAGTCGAGCC AGCGAACCGG CGCCTCGTTG GGGGCGATTA CCGACCAGGT CGAGCACATC
AGCGACATGA ACCATCAGGT GGCAACGGCG ACGGAAGAGC AGTCGGCGGT GACCGAGGAG
ATCAACCGGA CGGTGCAGGG GATTTCTGAC CTGGCCAGGG AAACGGCGGC GGAAGTGCAG
GGGTGTCGCG AGGAGTGCCA GGCGTTGCGT GGGCTGGCCG ATGATCTTGC GCGGCAGATG
GGCGGGTTCA AACTTTAG
|
|---|
| Protein sequence | MGIWRRSIQW QLIASMGAAL LASILVVVII FTVALNRLTD RYLVDTALPA SIEAIRNDIE
RMLGQPLVAA ADIAGNTLLR DWLAAGEDAG EMPRFIEYLQ AAKQRNQAFT TLFASTETGH
YYNENGLDRT LSRDNPKDKW FYGYIDSGAE RLINIDIDGA TGELALFIDY RVEKDGKLVG
VAGMGLRMTE LSKLIHDFSF GEHGKVFLVR NDGLIQVHPD NAFSGKRQLA QQLDEQAAKV
VMSGEQGLRT SRFQREGEGY LALGLPLRDL NWTLVAEVPE AEIYAQMRQA VWLTTAIGGG
VALLSLLLVV LLARGLVRPI RRVTAALVQI GSGAGDLSHR LDDSRQDELG DLARGFNRFL
DSQRGLIGEV LRTTERLHRA VEQVTQVVDN TAERSGRQQE MTEMVATAVH EMGLTVQDIA
RNAGDAAQAS QSARDEALQA REVVRRSIQG IEGMSGDIGK AADAVAQLAD EVASIDEVLA
VIRSISEQTN LLALNAAIEA ARAGEMGRGF AVVADEVRTL ARRTQVSTDE VQQMIQRLKH
GAGSAVTSMH AGQQATGSGV ESSQRTGASL GAITDQVEHI SDMNHQVATA TEEQSAVTEE
INRTVQGISD LARETAAEVQ GCREECQALR GLADDLARQM GGFKL
|
|---|
| |