Gene PputW619_4815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4815 
Symbol 
ID6113804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp5307547 
End bp5309397 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content60% 
IMG OID641624626 
ProductRNA polymerase sigma factor RpoD 
Protein accessionYP_001751660 
Protein GI170723972 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATCAAAGAGT TGATCACCCG CGGTCGTGAG 
CAGGGCTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CTGAGGATAT TTCAGATCCT
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGAGT
GCTCCGGATG CGGATGCCCT TCTGTTGGCG GAAGCCGACA CCGACGAAGC CGCGGCCGAA
GAAGCCGCTG CTGCGTTGGC GGCCGTTGAA ACCGATATCG GCCGCACGAC CGACCCTGTG
CGCATGTATA TGCGCGAAAT GGGTACTGTC GAGCTCCTGA CCCGCGAAGG CGAAATCGAA
ATCGCCAAGC GTATCGAGGA AGGCATCCGT GAAGTGATGG GCGCTATTGC CCACTTCCCG
GGCACAGTTG ACTACATCCT CGGTGAATAC GACCGCGTCA CCACCGAAGG TGGCCGCCTG
TCCGATGTTC TCAGCGGTTA CATCGACCCT GACGACAATA TTGCCGCTCC GACCGAAGAG
GTGCCGATCC CTGGCGCCAA GGCCGCAGCC GCGAAGGAAG AGGCCGACGA CGAGGAAGAA
AGCGACGATA GCAGTGACGA TGAGGAAGAG ACCGAAAGCG GTCCGGACCC AGTCGTTGCA
GCCCAGCGTT TCGGCGCGGT GTCGGATCAG CTCGCCATCA CCCTCAAGGT GCTGAAAAAG
CATGGCCGCA GCCACGCCGA GAGCATCGGT GCAATGCAGG CCCTGGCCGA TCTGTTCATG
CCGATCAAGC TGGTGCCCAA GCAGTTCGAC GTACTGGTAG AGCGCGTTCG CGATGCCCTG
GCCCGCCTGC GTCAGCAAGA GCGTGCCATC ATGCAACTGT GCGTGCGTGA TGCGCGCATG
CCGCGTGCCG ACTTCCTGCG CCTGTTCCCG AGCAACGAGA CCGACCAGAC CTGGAGCGGT
GACCTGGCCA AGCGCAACAC CAAATGGGCT GCTGCCCTGG GTGAAAAGGA CGCCGCCATC
GTCGCCTGCC AGCAAAAGTT GATCGACCTT GAGACCGAGA CCGGCCTGAC CGTTGCCGAG
ATCAAGGACA TCAACCGCCG CATGTCCATC GGTGAGGCCA AGGCCCGCCG CGCCAAGAAA
GAAATGGTCG AGGCGAACCT GCGTCTGGTG ATCTCCATCG CCAAGAAGTA CACCAACCGC
GGCCTGCAGT TCCTCGACCT GATTCAGGAA GGCAACATCG GCCTGATGAA AGCGGTGGAC
AAGTTCGAAT ACCGTCGCGG TTACAAGTTC TCGACCTACG CCACCTGGTG GATTCGTCAG
GCGATTACCC GCTCGATCGC CGACCAGGCA CGCACCATCC GTATCCCGGT GCACATGATC
GAGACGATCA ACAAGCTCAA CCGCATTTCC CGGCAGATGC TGCAGGAAAT GGGTCGCGAA
CCGACCCCGG AAGAGCTCGG TGAGCGCATG GAGATGCCTG AGGACAAAAT CCGCAAGGTC
CTGAAGATCG CCAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA TGAAGATTCG
CACCTGGGCG ATTTCATCGA GGACTCGACC ATGCAGTCCC CGATCGACGT GGCCACGGTC
GAAAGCCTCA AGGAAGCGAC CCGCGACGTG CTTTCGGGCC TGACCGCACG CGAAGCCAAG
GTGCTGCGCA TGCGTTTCGG TATCGACATG AACACCGACC ACACCCTCGA AGAAGTGGGC
AAGCAGTTCG ACGTGACCCG TGAACGGATC CGTCAGATCG AAGCGAAGGC GTTGCGCAAA
TTGCGCCACC CGACGCGCAG CGAGCACCTG CGATCTTTCC TCGACGAGTG A
 
Protein sequence
MSGKAQQQSR IKELITRGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES 
APDADALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMGAIAHFP GTVDYILGEY DRVTTEGGRL SDVLSGYIDP DDNIAAPTEE
VPIPGAKAAA AKEEADDEEE SDDSSDDEEE TESGPDPVVA AQRFGAVSDQ LAITLKVLKK
HGRSHAESIG AMQALADLFM PIKLVPKQFD VLVERVRDAL ARLRQQERAI MQLCVRDARM
PRADFLRLFP SNETDQTWSG DLAKRNTKWA AALGEKDAAI VACQQKLIDL ETETGLTVAE
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV
ESLKEATRDV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPTRSEHL RSFLDE