| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4788 |
|---|
| Symbol | |
|---|
| ID | 6113777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5276805 |
|---|
| End bp | 5277632 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641624599 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001751633 |
|---|
| Protein GI | 170723945 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.776443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGCC CATACATGTC GCCCGTGGAG CGGGTGTGGT TCTACAGCCT GCGTATCCTT
TGCGGCCTGA TATTGCTGTT TCTGGTGTTG CCGGTACTGG TGATCGTGCC GCTGTCGTTC
AACAGTGGCA GCTTCCTGGT GTACCCACTG CAAGGCTTCT CACTGCAGTG GTACCACGAT
TTCTTCGCCT CGGCCGAGTG GATGCGCGCC CTGAGGAACA GCGTCATCGT CGCCCCGGCG
GCCACGCTGC TGGCCATGGT GTTCGGTACG CTGGCAGCGA TCGGGCTTAC CCGCGCCGAC
TTTCCGGGCA AGTCGCTGGT CATGGCGCTG GTGATTTCGC CGATGGTGGT GCCGGTGGTG
ATCATTGGTG TAGCCAGCTA CCTGTTCTTT GCCCCGTTGG GGATGGGTAA CAGCTTCATT
TCGCTGATCC TGGTGCACGC GGTGCTGGGT GTGCCGTTCG TCATCATCAC CGTTTCGGCG
ACCTTGCAAG GCTTCAATTA CAACCTGGTG CGTGCGGCTG CCAGCCTGGG GGCCTCACCG
GTGGTTGCGT TTCGCAGGGT CACCTTGCCG CTGATCGCCC CCGGGGTGAT CTCGGGGGCG
CTGTTCGCCT TCGCGACCTC TTTCGATGAG GTGGTGGTGA CGCTGTTCCT CGCCGGGCCA
GAACAGGCCA CTCTGCCGCG GCAGATGTTC AGCGGCATTC GCGAGAACCT GAGCCCGACG
ATTGCAGCGG CAGCGACCTT GCTGATCGGT TTTTCGGTGG TGCTGCTGCT GACCCTGGAG
TGGCTGCGCG GGCGCAGTGA GAAGCTTAGG ACTCAGCAGC CTGCCTGA
|
|---|
| Protein sequence | MLSPYMSPVE RVWFYSLRIL CGLILLFLVL PVLVIVPLSF NSGSFLVYPL QGFSLQWYHD
FFASAEWMRA LRNSVIVAPA ATLLAMVFGT LAAIGLTRAD FPGKSLVMAL VISPMVVPVV
IIGVASYLFF APLGMGNSFI SLILVHAVLG VPFVIITVSA TLQGFNYNLV RAAASLGASP
VVAFRRVTLP LIAPGVISGA LFAFATSFDE VVVTLFLAGP EQATLPRQMF SGIRENLSPT
IAAAATLLIG FSVVLLLTLE WLRGRSEKLR TQQPA
|
|---|
| |