| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4737 |
|---|
| Symbol | rplE |
|---|
| ID | 6113719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5224114 |
|---|
| End bp | 5224653 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641624541 |
|---|
| Product | 50S ribosomal protein L5 |
|---|
| Protein accession | YP_001751582 |
|---|
| Protein GI | 170723894 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0094] Ribosomal protein L5 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00873114 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.498496 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGAC TGAAAGAGAT TTACCGGAAC GAGATCGCTC CTAAGCTTAA GGAAGAACTT
AAGCTGTCGA ACGTGATGGA AGTTCCGCGC GTTACCAAGA TCACCCTGAA CATGGGTCTG
GGCGAAGCGA TCGGCGACAA GAAAGTCATC GAGCACGCTG TTGCTGACCT GGAAAAGATC
ACCGGTCAAA AGCCGGTTGT GACTTTCGCT CGTAAATCCA TCGCGGGCTT CAAAGTCCGT
GAAGGATGGC CGATCGGCGT CAAGGTGACC CTGCGTCGCG AAAAGATGTA CGAATTCCTG
GACCGCCTGC TGGCGATCTC CCTGCCTCGG GTCCGCGACT TCCGCGGCCT GAATGCCAAG
TCCTTCGATG GTCGTGGCAA CTACAGCATG GGCGTGAAAG AGCAGATCAT CTTCCCGGAA
ATCGATTACG ACAAGATCGA TGCTCTGCGC GGTTTGGACA TCACCCTGAC CACCACTGCT
CGTTCGGATG ACGAAGGCCG CGCTCTGCTG CGTGCATTCA AATTCCCGTT CCGCAACTGA
|
|---|
| Protein sequence | MARLKEIYRN EIAPKLKEEL KLSNVMEVPR VTKITLNMGL GEAIGDKKVI EHAVADLEKI
TGQKPVVTFA RKSIAGFKVR EGWPIGVKVT LRREKMYEFL DRLLAISLPR VRDFRGLNAK
SFDGRGNYSM GVKEQIIFPE IDYDKIDALR GLDITLTTTA RSDDEGRALL RAFKFPFRN
|
|---|
| |