| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4719 |
|---|
| Symbol | |
|---|
| ID | 6113701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5210037 |
|---|
| End bp | 5211431 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641624523 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001751564 |
|---|
| Protein GI | 170723876 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.210959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGACA CCCACAACGA GCGCATGAGT GGCAGCGAAA CGCGCGCCGC TGGCGGCCTG
GCCCTGGTCT TTGCCTTTCG TATGCTGGGC ATGTTCATGG TCTTGCCGGT GCTGGCCACT
TACGGCATGG ACCTGGCCGG CGCCACCCCC GCGCTGATCG GCCTGGCCAT CGGTGCCTAT
GGGCTGACCC AGGCGTTTTT TCAGATCCCT TTCGGGATGA TTTCCGACCG CATCGGGCGA
CGTCCGGTGA TCTACCTGGG GCTGGTGATC TTCGCCTTGG GTAGTGTGCT GGCGGCTCAA
GCCGACTCCA TCTGGGGCGT GATTGCGGGG CGCATTCTGC AGGGCGCCGG GGCAATTTCT
GCCGCAGTCA TGGCGCTGCT GTCCGACCTG ACCCGCGAGC AGCACCGTAC CAAGGCCATG
GCCATGATCG GCATGAGCAT CGGATTGTCC TTCGCGGTGG CGATGGTCGT CGGCCCGCTT
CTCACCAGCG CCTTCGGCCT GTCAGGATTG TTCCTCGCCA CGGCAGGACT TGCCCTGGTC
GGTATTTTGC TGGTCGCTTT CGTCGTGCCC AACACCCACA GCACTTTGCA GCACCGCGAG
TCGGGTGTGG CGCGCCAGGC ACTCGGCCCA ACCCTGCGCC ATCCGGACCT TCTGCGCCTG
GACACCGGCA TCTTCATCCT CCACGCGATC CTCATGGCGA GCTTCGTCGC GCTGCCTCTG
GCCTTCGTCG AGCGCGGCGG CTTGCCTAAG GAAGAGCATT GGTGGGTATA CCTGACCGCG
CTGTTCATCT CATTTTTTGC AATGGTCCCG TTCATCATCT ACGGCGAAAA AAAGCGCAAG
ATGAAACGCG TATTGGCCGG AGCGGTCAGT GTGTTGCTGC TGGTGGAGGT GTTCTTCTGG
CAGTGGGCTG ACAACTTGCG CGGACTGGTG ATTGGCACCG TGGTATTCTT TACTGCATTC
AACCTGCTGG AGGCATCGCT GCCGTCGCTG GTTAGCAAGG TGTCGCCTGC CGGCGGCAAG
GGAACGGCGA TGGGGGTGTA TTCCACCAGC CAGTTCCTTG GCGCTGCGCT GGGTGGAATC
CTTGGTGGCT GGCTGTTCCA GCACGGTGGG CTGAACACGG TGTTCCTCGG TTGCGCGGTG
CTGTGTGCCG TATGGCTGGT GGTCGCGTTG CGCATGAACG AGCCGCCTTA TGTGACCAGC
CTGCGCATGC CACTGACGCC TGAGGCAGTC CGGGAAGCCG GCCTGACCGA GCGCCTGATG
GCCGTGCCGG GTGTGACCGA CGCCGTTGTG GTGGCAGAAG AAGCTGCCAT CTATATCAAA
CTGGATACGA AAATTTTGGA CCGTGCGACC CTCGAGCGTC TGGTGAACCC AGCCTCATCG
GCGTGCGAAG CCTAG
|
|---|
| Protein sequence | MHDTHNERMS GSETRAAGGL ALVFAFRMLG MFMVLPVLAT YGMDLAGATP ALIGLAIGAY
GLTQAFFQIP FGMISDRIGR RPVIYLGLVI FALGSVLAAQ ADSIWGVIAG RILQGAGAIS
AAVMALLSDL TREQHRTKAM AMIGMSIGLS FAVAMVVGPL LTSAFGLSGL FLATAGLALV
GILLVAFVVP NTHSTLQHRE SGVARQALGP TLRHPDLLRL DTGIFILHAI LMASFVALPL
AFVERGGLPK EEHWWVYLTA LFISFFAMVP FIIYGEKKRK MKRVLAGAVS VLLLVEVFFW
QWADNLRGLV IGTVVFFTAF NLLEASLPSL VSKVSPAGGK GTAMGVYSTS QFLGAALGGI
LGGWLFQHGG LNTVFLGCAV LCAVWLVVAL RMNEPPYVTS LRMPLTPEAV REAGLTERLM
AVPGVTDAVV VAEEAAIYIK LDTKILDRAT LERLVNPASS ACEA
|
|---|
| |