| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4685 |
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| Symbol | hfq |
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| ID | 6113667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5174683 |
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| End bp | 5174943 |
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| Gene Length | 261 bp |
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| Protein Length | 86 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641624490 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_001751531 |
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| Protein GI | 170723843 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAAAAG GGCATTCGCT ACAAGACCCT TACTTGAACA CCTTGAGAAA AGAAAAGGTC
CCGGTTTCGA TCTATCTGGT CAACGGGATC AAGCTGCAGG GCTCGATCGA ATCGTTCGAC
CAGTTCGTGG TGCTGCTGAA GAACACTGTC AGCCAGATGG TCTACAAGCA CGCGATTTCG
ACCGTGGTTC CAGCCCGTCC GGTTCGCCTG CCAAGCCCGT CCGATTCCGA ACACGGCGAC
AGCGAACCAG GCAACGCCTG A
|
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| Protein sequence | MSKGHSLQDP YLNTLRKEKV PVSIYLVNGI KLQGSIESFD QFVVLLKNTV SQMVYKHAIS
TVVPARPVRL PSPSDSEHGD SEPGNA
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