| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4610 |
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| Symbol | |
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| ID | 6113591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 5093808 |
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| End bp | 5094821 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641624416 |
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| Product | NifR3 family TIM-barrel protein |
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| Protein accession | YP_001751459 |
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| Protein GI | 170723771 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.51242 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0845933 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCGG TACGCATCGG CCCATACACA CTACGCAACA ACCTGATCCT CGCGCCCATG
GCCGGGGTCA CGGACCAGCC TTTCCGTACA CTTTGCAAGC GCCTGGGCGC GGGCATGGTG
GTGTCGGAGA TGGTCAGCAG CGACATGAGC CTGTGGAACA GCCGCAAGTC GAGCCTGCGC
CGCATTCACG AAGGCGATCC CGAGCCGCGC TCGGTACAGA TCGCCGGTGG CGATGCGCAG
ATGATGGCGG CGGCGGCCAG GGCCAACGTC GAAGCTGGCG CCCAGATCAT CGACATCAAC
ATGGGTTGCC CGGCGAAAAA AGTCTGCAAC AAAGCTGCAG GCTCTGCTTT ATTGAGAGAT
GAAGCTTTGG TCAGCGAGAT TCTCCACGCC GTCGTCGGCG CGGTGGACGT CCCGGTGACG
CTGAAGATCC GCACCGGTTG GGACCGGGCG AACAAGAACG GCCTGAACGT GGCGAGGATC
GCCGAGCAGG CTGGCATCCA GGCGCTGGCG GTGCATGGCC GCACACGCGC CGACCTGTAC
ACCGGCGAAG CCGAATACGA CACCATCGCT GCCATCAAGC AGGCGGTGTC CATCCCGGTT
TTTGCCAACG GCGATATCAC TTCGCCAGAA AAGGCCCGGG CGGTGCTGGA CGCCACCGGC
GTCGACGGTC TGCTGATTGG CAGGGCCGCC CAGGGGCGGC CCTGGATCTT TCGCGAGATC
GAGCATTACC TGGGGACTGG CCAGCACTTG CCGGCCCCGC AGCTGGACGA AGTGGAACGT
ATCCTGCTGG AGCACCTTGC CGCGCTGCAC GCCTTCTATG GCGATGTGAT GGGTGTACGG
ATCGCCCGCA AGCACGTTGG CTGGTACCTG GCAACACGAC CCGGCGGCAA GGAGTTTCGC
TCCCGGTTCA ACGCTTTGGA AGACACACAA GCGCAGTGCG CCAACGTTCG AGCGTATTTC
AGCGAACGTC GACAGAGCCT TGAGACAGAG GACGGACAAG GGGTGGCCGC ATGA
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| Protein sequence | MSAVRIGPYT LRNNLILAPM AGVTDQPFRT LCKRLGAGMV VSEMVSSDMS LWNSRKSSLR
RIHEGDPEPR SVQIAGGDAQ MMAAAARANV EAGAQIIDIN MGCPAKKVCN KAAGSALLRD
EALVSEILHA VVGAVDVPVT LKIRTGWDRA NKNGLNVARI AEQAGIQALA VHGRTRADLY
TGEAEYDTIA AIKQAVSIPV FANGDITSPE KARAVLDATG VDGLLIGRAA QGRPWIFREI
EHYLGTGQHL PAPQLDEVER ILLEHLAALH AFYGDVMGVR IARKHVGWYL ATRPGGKEFR
SRFNALEDTQ AQCANVRAYF SERRQSLETE DGQGVAA
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