Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4592 |
Symbol | |
ID | 6113573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 5068278 |
End bp | 5070632 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641624398 |
Product | penicillin-binding protein 1C |
Protein accession | YP_001751441 |
Protein GI | 170723753 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0233923 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAGCT TAGCGCGACC GCGCACCCGA GCGGCAAGGA TCCTGCGCGC CTGTGTGATG GCGCTGGTGG GCATCGCCGG CCTATTGTGG CTGGCTGACC GCATCTGGCC ATTGCCCATG CCGGCAGATG ATCTGGCGCG GGTCGTGCTG GCCGAAGACG GCACGCCCTT GTGGCGCTTC GCCGATGCCG AGGGCGTGTG GCGCTACCCG GTCAGCCCCA AAGAGGTTTC GCCTTTGTAC CTGCAGGCGC TGCTGACCTA TGAGGACCGC TGGTTCTACC ACCACCCGGG GGTCAACCCG CTGGCGCTGG TGCGCGCGGC ATGGCTGAAC GTGCGCGGCG GGCGGGTTGT TTCAGGTGGC AGCACGCTGT CGATGCAGGT GGCGCGTTTA CTCGACCCGC ACGACCGCAC GCTGGCAGGC AAGCTGCGGC AACTGTGGCG TACGGCGCAG TTGGAATGGC ACCTGTCCAA GCACGAGATT CTGCAGATCT ACCTCAATCG CGCACCCTTC GGTGGCACCT TGCAGGGCGT GGCGGCGGCC AGTTGGGCTT ACCTCGGCAA ATCGCCGATG CACCTCACGC CTGCCGAAGC GGCGCTGCTG GCGGTGCTGC CCCAGGCACC CAGCCGGTTG CGCCCGGACC GTCATCCCGC ACGCGCCCAG CGTGCGCGGG ATAAGGTCCT GCAGCGCCTG GACGAGTATC AGGTGTGGCC TGCCTGGCAG ATCAAGGAAG CTGCTGAAGA ACCGTTACTG CTGGCCCCGC GTCAGGAGCC AGCCTTGGCA CCGCTGCTGG CACGCCGCCT GAACACTCCC GGCAGCCCGC CGTTGATCCG CACCACGCTC GATGCCTCGT TGCAGCGGCG CCTGGAGGAC CTGCTGCTGG GCTGGCGTGC CCGCTTGCCG GAACGTACCT CCGCGGCCGT GCTGGTGGTG GATGCGCAGA GCATGGCCGT ACGTGCCTAC CTGGGTTCGA TCGACCTTGC CGATGAGCGC CGTTTCGGCC ACGTCGACAT GGTCCGCTCG CTGCGTTCAC CAGGCTCGAC CCTCAAGCCG TTCCTTTATG GCATGGCCCT GGACGACGGC CTGATCCATT CCGAATCGCT GCTGCAGGAT GTACCGCGCC GCTATGGCGA TTACCGGCCT GGCAACTTCT CGATGGGTTT CAGCGGCCCG GTCTCGGCCA GTTCGGCGCT GGCCTTGTCG CTGAACCTGC CGGCGGTACA GTTGCTCGAA GCGTATGGGC CCAAACGCTT TGCCGCGCAA CTGCGCATGG CCGGCATGCC GCTGGCGCTG CCGCCATTGG CCGAGCCTAA TCTGTCGTTG ATCCTCGGTG GCGCAGGCAG CCGCCTGGAG GAGCTGGTGG GTGGTTATGC GGCATTGGCC CGGGGCGGCA ACAGTGCGCG GGTGCGTCTG CAACCGCAGG ATCCACTGCT GGAGCGGCGT CTGCTGTCGC CGGGGGCGGC GTGGATCATC CGGCGTATTC TCAGCGGCCA GGCGCGGCCG GACCGTGACC CGCACGCGCA GTTGGTGCAA CGCCCGCAGT TGGCCTGGAA AACGGGTACC AGCTATGGCT TTCGTGATGC CTGGTCGATC GGCGTCGGGC CGCGTTATCT GATTGGCGTG TGGATTGGCC GGCCCGACGG CACCCCAGTG CCCGGCCAGT TCGGCCTGGC TTCGGCGGCG CCGCTGATGC TGCAGATTCA CGACCTGCTG ACCAACCGTG ACAGCCAGCG GGGCCTTGGC GTGCCGGTCG AACAGGTGCC CGCCAGCATT GGCGTGGCCG CGATCTGCTG GCCGCTGGGC CAGCCCATGA ACCGGCAAGA CCCCAACTGC AGACGCCAGC GCTTTGCCTG GACACTCGAC GGCACCACCC CGCCGACCCT GCAGGCATCC GATCAACCGC TTGGGCTGGG TTTGCGTGAG CAGGTCTGGG TCAACGCGCA GGGGCTGCGG GTGGATGGCT CGTGCCCAGG TGCCCACGCG CGTGATGTCG CCCTTTGGCC GGCCCCGCTC GAGCCTTGGC TGGCGCGGGT CGAGCGGCGT GCGGCGCGGC TGCCGGCGGT GGACCCAAGC TGCCCGCCGC AGGTACCTGC CACGGCACCG CCCCTGTCCA TCGTCGGTGT ACGCCCAGGC GACAACCTGC GCCGCCCGGC CACCAGCAGC GAGCCGTTGC AACTGCAGGT TTCGGCTCTG GGTGGGGGTG GGCGGCGCTG GTGGTTCCTC AACGGCCAGC CCCTTGGCCA GACTGAGGGC CAGGGCAGCA TGCGGGTGCG CTTTGAGCAG GCCGGGCAGA TCGAGCTCAG CGCACTGGAT GAGAGCGGTG AAACCGCGCG GGTGGCCTTC CAGGTCAGCG AGTAG
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Protein sequence | MPSLARPRTR AARILRACVM ALVGIAGLLW LADRIWPLPM PADDLARVVL AEDGTPLWRF ADAEGVWRYP VSPKEVSPLY LQALLTYEDR WFYHHPGVNP LALVRAAWLN VRGGRVVSGG STLSMQVARL LDPHDRTLAG KLRQLWRTAQ LEWHLSKHEI LQIYLNRAPF GGTLQGVAAA SWAYLGKSPM HLTPAEAALL AVLPQAPSRL RPDRHPARAQ RARDKVLQRL DEYQVWPAWQ IKEAAEEPLL LAPRQEPALA PLLARRLNTP GSPPLIRTTL DASLQRRLED LLLGWRARLP ERTSAAVLVV DAQSMAVRAY LGSIDLADER RFGHVDMVRS LRSPGSTLKP FLYGMALDDG LIHSESLLQD VPRRYGDYRP GNFSMGFSGP VSASSALALS LNLPAVQLLE AYGPKRFAAQ LRMAGMPLAL PPLAEPNLSL ILGGAGSRLE ELVGGYAALA RGGNSARVRL QPQDPLLERR LLSPGAAWII RRILSGQARP DRDPHAQLVQ RPQLAWKTGT SYGFRDAWSI GVGPRYLIGV WIGRPDGTPV PGQFGLASAA PLMLQIHDLL TNRDSQRGLG VPVEQVPASI GVAAICWPLG QPMNRQDPNC RRQRFAWTLD GTTPPTLQAS DQPLGLGLRE QVWVNAQGLR VDGSCPGAHA RDVALWPAPL EPWLARVERR AARLPAVDPS CPPQVPATAP PLSIVGVRPG DNLRRPATSS EPLQLQVSAL GGGGRRWWFL NGQPLGQTEG QGSMRVRFEQ AGQIELSALD ESGETARVAF QVSE
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